Explore projects

Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

The FSL Python Library

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

FSLeyes, the FSL image viewer.

CLI to download entire projects from openneuro.org

WMH and lesion segmentation tool

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

The WIN open science tool to package up, and share data and analyses

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.