Explore projects

Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/

FSLeyes, the FSL image viewer.

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

The FSL Python Library

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

The WIN open science tool to package up, and share data and analyses

CLI to download entire projects from openneuro.org

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

WMH and lesion segmentation tool

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.