Explore projects

Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/

FSLeyes, the FSL image viewer.

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

The FSL Python Library

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

The WIN open science tool to package up, and share data and analyses

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.