Explore projects

FSLeyes, the FSL image viewer.

Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/

The FSL Python Library

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

WMH and lesion segmentation tool

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

CLI to download entire projects from openneuro.org

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

The WIN open science tool to package up, and share data and analyses

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.