Explore projects
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Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/
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FSL / pyfeeds
Apache License 2.0The FSL Evaluation and Example Data Suite (FEEDS), now in Python!
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X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract
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FSL / file-tree
MIT LicenseFileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.
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Istvan N Huszar / tirl
Apache License 2.0Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.
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Fidel Alfaro Almagro / UK_biobank_pipeline_v_1
Apache License 2.0Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford
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Fidel Alfaro Almagro / UKB_UNCONFOUND_v2
Apache License 2.0Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.
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Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation
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FSL / funpack
Apache License 2.0The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit
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preclinical-imaging / Bruker_7T_DMRI_Pipeline_ExVivo_OpenSource
Apache License 2.0Updated -
preclinical-imaging / Bruker_7T_QSM_R2s_Pipeline_ExVivo_OpenSource
Apache License 2.0Updated -
profumo / PROFUMO
OtherCode for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.
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Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.
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