Explore projects

FSLeyes, the FSL image viewer.

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

The FSL Python Library

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

WMH and lesion segmentation tool

CLI to download entire projects from openneuro.org

The WIN open science tool to package up, and share data and analyses

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit