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FSL / Oxford-MM templates
Creative Commons Attribution Share Alike 4.0 InternationalMultimodal templates constructed by jointly optimising similarity across multiple scalar- and tensor-based modalities using MMORF for nonlinear registrations.
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Data for Xtract - development is now at https://github.com/SPMIC-UoN/xtract_data/
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X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract
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FSL / pyfeeds
Apache License 2.0The FSL Evaluation and Example Data Suite (FEEDS), now in Python!
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Talks, practicals, and other materials for the 2020 WIN PyTreat
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Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme
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open-science / community / data-sharing-decision-tree
Creative Commons Attribution 4.0 Internationaldevelopment of the process and decision tree for sharing data on the WIN XNAT server
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FSL / file-tree
MIT LicenseFileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.
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Istvan N Huszar / tirl
Apache License 2.0Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.
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Fidel Alfaro Almagro / UK_biobank_pipeline_v_1
Apache License 2.0Pipeline for brain imaging processing of UK Biobank.
Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.
Contributions by FMRIB Analysis Group, University of Oxford.
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Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.
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Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation
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Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.
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