Explore projects

WMH and lesion segmentation tool

CLI to download entire projects from openneuro.org

Scripts to support gridengine

Multimodal Image Segmentation Tool

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

A repo of folders containing Vagrant files that define useful Virtualbox recipes

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

UK Biobank imaging pipeline adaptations for use in a real-world memory clinic sample at the Oxford Brain Health Clinic

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.