Explore projects

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Implementation of Bayesian EstimatioN of CHange

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

A repo of folders containing Vagrant files that define useful Virtualbox recipes

The FSL installer (for conda-based FSL releases)

Python-based asymmetric fibre orientation distributions (aFODs) estimation library

FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.