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FSL documentation

An fsleyes plugin for NIfTI-MRS data

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Computational modelling course taught as part of the WIN graduate programme.

This project will aim to address one of the big challenges in imaging-neuroscience: that of how a brain’s functional connectivity, represented by resting-state maps, can be predicted from structural connectivity information obtained from dw-MRI.

CUSP : A C++ Templated Sparse Matrix Library

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

Implementation of Bayesian EstimatioN of CHange

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Python-based asymmetric fibre orientation distributions (aFODs) estimation library

A repo of folders containing Vagrant files that define useful Virtualbox recipes

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.

Tools for low rank denoising of MRSI.

Utility to download and install FSL modules - patch files, atlases, standard templates, example data, etc etc.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

FSLeyes, the FSL image viewer.