Explore projects

Jekyll just-the-docs theme example. Served at https://open.win.ox.ac.uk/pages/cassag/just-the-docs/

FSL-MRS code for the 2021 diffusion weighted MRS workshop.

Repository for code from 'Individual differences in slow wave sleep architecture relate to variation in white matter microstructure across adulthood' by Gudberg et al.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank

bet for clinical CT images

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

Unfold toolbox fork (https://github.com/unfoldtoolbox/unfold). Allows more control of regularization.

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Repository for spec2nii test data.

Repository for code and materials from 'A macroscopic link between tract myelination and tract physiology during action reprogramming' by Lazari et al.

Guidelines for using the open science "analysis" GitLab subgroup

Repository associated with the following publication: Social prediction modulates activity of macaque superior temporal cortex Lea Roumazeilles, Matthias Schurz, et al

Guidelines for using the open science "community" GitLab subgroup

Space for the WIN Open Neuroimaging Community to build and share resources.

Served at https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community

Repository for code and materials from 'Reassessing associations between white matter and behaviour with multimodal microstructural imaging' by Lazari et al.