Explore projects

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Space for the WIN Open Neuroimaging Community to build and share resources.

Served at https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community

A repo of folders containing Vagrant files that define useful Virtualbox recipes

This flashing checkerboard script presents black screen vs flashing checkerboards in a block design. You will need a button box / gamepad device to trigger and record responses. Participant fixation is controlled via a simple fixation task.

The FSL installer (for conda-based FSL releases)

Binocular Energy Model for binocular disparity detection in V1 complex cells

Python-based asymmetric fibre orientation distributions (aFODs) estimation library

FSL MELODIC results viewer. Specifically intended for use with training the FIX tool.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

bet for clinical CT images

Tools for low rank denoising of MRSI.