Explore projects

computes a gyral coordinate system (as well as many utilities to work with meshes)

Python GUI for the WIN escape room public engagement event

A repo of folders containing Vagrant files that define useful Virtualbox recipes

B0 Quality Control (bzqc) is a program that determines the best inputs for topup and eddy. It will also create most of the required input files for these tools.

Code and pipeline for the extraction of fibre dispersion from MDE data

CLI to download entire projects from openneuro.org

Talks and Jupyter notebook-based practicals for the 2018 WIN PyTreat

WIN Information Retrieval Engine

Download open access data sets from popular online repos. Part of WIN's open science initiative.

Talks, practicals, and other materials for the 2020 WIN PyTreat

Talks, practicals, and other materials for the 2020 WIN PyTreat

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

strokeseg is a python package + command line program to identify stroke in clinical brain images.

Talks, practicals, and other materials for the 2020 WIN PyTreat

Standalone FSLeyes builds

Triplanar U-Net Ensemble model for white matter hyperintensities segmentation