Explore projects

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

WMH and lesion segmentation tool

FSL documentation

Psychtoolbox-based task: reprogramming behaviour with TMS triggers, based on Neubert et al., 2010

Multimodal Image Segmentation Tool

Tractograms and masks associated with Folloni et al., 2019 eLife

This folder contains practical sessions from a course taught in the Experimental Psychology department at the University of Oxford on computational modelling of behavioural data, building on the paradigm of Behrens et al. (NN, 2007).

This project contains all the code for behavioural analysis of subject performance

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

BRC-EM Transparent and Reproducible fMRI Analysis guide. Code and tutorials for analysis of a typical functional magnetic resonance imaging (fMRI) task data set collected as part of a study adopted by the University of Oxford Health Biomedical Research Centre (BRC) Experimental Medicine theme (BRC-EM).

Diffusion models implemented in the cudimot framework. See https://users.fmrib.ox.ac.uk/~moisesf/cudimot/ for more details.

This is an open-source repository with the data supporting the publication "Manipulation of subcortical and deep cortical activity in the primate brain using transcranial focused ultrasound stimulation"

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

The workshop would be split over three sessions of 2hrs duration over three consecutive weeks: Fundamentals of image analysis with DL, Intermediate session and project sessions.