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Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

Grid submission wrapper

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.

FSLeyes, the FSL image viewer.

Code to support the BigMac dataset: an open resource combining multi-contrast MRI and microscopy in a macaque brain.

This repository contains processing code for the following publication:

Eichert N, Papp D, Mars RB & Watkins KE (2020) Mapping human laryngeal motor cortex during vocalization. Cerebral Cortex (accepted).

My first python package, random utilities

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

use enantiomorphic technique to fill pathological sections of a 3d brain image. Requires a binary mask with ones in areas of damage.

get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank