GitLab

Educational material for the WIN Analysis Group

Beta version of MMORF for internal FMRIB release.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

X-species automated tractography tool

Talks, practicals, and other materials for the 2020 WIN PyTreat

development of the process and decision tree for sharing data on the WIN XNAT server

FSLeyes, the FSL image viewer.

Data for Xtract

CLI to download entire projects from openneuro.org

Binocular Energy Model for binocular disparity detection in V1 complex cells

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Compilation of practicals for thee Advanced Analysis part of the WIN@FMRIB Graduate Programme

repo of files sorted by each meeting

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

FIX - FMRIB's ICA-based Xnoiseifier Gholamreza Salimi-Khorshidi and Stephen Smith, FMRIB Analysis Group MATLAB compilation/wrapper Duncan Mortimer Copyright (C) 2012-2019 University of Oxford

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

A newmat-like wrapper around the Armadillo linear algebra library (http://arma.sourceforge.net/)

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

FileTrees provide a way to define the content of a structured directory. This can be very handy when defining input/output files for a pipeline.