Explore projects

get a real dataset location from a dataset_loc.txt file in a zenodo repository. Useful for WIN DigitalBrainBank

X-species automated tractography tool

Code for "Harmonising large-scale imaging databases to provide integrated assessments of the role of white matter hyperintensities in cognitive aging." Discovery Award Project

WIN Information Retrieval Engine

Download open access data sets from popular online repos. Part of WIN's open science initiative.

MRS basis spectra for WIN sequences generated using FSL-MRS's simulator.

Computational modelling course taught as part of the WIN graduate programme.

This is a project for hierarchical modelling of white matter tract useful for fixel based analysis.

A repo of folders containing Vagrant files that define useful Virtualbox recipes

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

Code for the generation, processing, and analysis of imaging confounds in UKB Biobank.

The FMRIB UK BioBank data processing library. ukbparse is no longer being developed - it has been superseded by funpack - https://git.fmrib.ox.ac.uk/fsl/funpack/

Scripts for QSM processing of the UK Biobank swMRI data

Version 1.5 of the Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.