Explore projects

X-species automated tractography tool - development is now at https://github.com/SPMIC-UoN/xtract

The FSL Evaluation and Example Data Suite (FEEDS), now in Python!

Talks, practicals, and other materials for the 2020 WIN PyTreat

The FSL Python Library

FSLeyes, the FSL image viewer.

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

Triplanar U-Net ensemble network (TrUE-Net) model for WMH segmentation

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

Analysis pipeline used in the ‘Capturing MultiORgan Effects of COVID-19’ (C-MORE) study.

FSL Tools for MR Spectroscopy - Fitting/Plotting/Simulations/etc.

Exploring machine learning methods, with special focus on the deep learning methods in order to attempt Neuroimage segmentation and analysis

CLI to download entire projects from openneuro.org

Tensor Image Registration Library - a modular general-purpose image registration framework for Python with prebaked scripts for histology-to-MRI registration.

Code for inferring PRObabilistic FUnctional MOdes. See DOI: 10.1016/j.neuroimage.2015.01.013 and DOI: 10.1016/j.neuroimage.2020.117226.

Pipeline for brain imaging processing of UK Biobank.

Pipeline developed by Fidel Alfaro Almagro, Steve Smith and Mark Jenkinson.

Contributions by FMRIB Analysis Group, University of Oxford.

Computational modelling course taught as part of the WIN graduate programme.

FSL documentation