Explore projects

Monte Carlo MR microstructure and sequence simulator

The FSL Python Library

Remove stupidly high intensities from MRI images which might negatively affect registration.

Personal utilities library (updated from mc_utils)

This is a project for hierarchical modelling of white matter tract useful for fixel based analysis.

Pipeline for unbiased multimodal template construction from T1, T2 and DTI images.

The FMRIB UKBioBank Normalisation, Parsing And Cleaning Kit

The FSL Python Library

Repository for the FSL-MRS dynamic fitting paper.

Guidance for booking of WIN Wednesdays and WIPs

Served at https://open.win.ox.ac.uk/pages/cassag/WIN-Wednesdays-and-WIPs

these are a set of scripts that I use to evaluate PROFUMO results on BDI clusters, slowly tidying them up