Update from home

fslswapdim.cc

@@ -111,9 +111,9 @@ int fmrib_main(int argc,char *argv[])
   cerr << "CHECK 3" << endl;
   invol.swapdimensions(dimarg(newx),dimarg(newy),dimarg(newz));
 
-
   cerr << "CHECK 4" << endl;
-  return save_volume4D(invol,outname,volinfo);
+  return save_volume(invol[0],outname,volinfo);
+  //return save_volume4D(invol,outname,volinfo);
 }
 
   

test_read.sh

+#!/bin/sh
+
+for fn in ../niftiio/epi?.* ; do
+  echo "  XXXXXXX $fn XXXXXXX "
+  ./avwstats++ $fn -p 98 -p 99
+done >& log_testread.txt
+
+cat log_testread.txt
+
+

test_write.sh

+#!/bin/sh
+
+/bin/rm epimj[1-6].* 
+
+for fn in ANALYZE:1 NIFTI_PAIR:2 NIFTI:3 ANALYZE_GZ:4 NIFTI_PAIR_GZ:5 NIFTI_GZ:6 ; do
+  num=`echo $fn | sed 's/.*://'`;
+  opt=`echo $fn | sed 's/:.*//'`;
+  export FSLOUTPUTTYPE=$opt
+  ./avwswapdim epi4 y z x epimj${num}
+done
+
+for fn in epimj[1-6].* ; do
+  val=`../niftiio/nifti1_test $fn | grep nifti_type`;
+  echo "  XXXXX $fn XXXXX $val "
+done
+