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CHANGELOG.md 6.78 KiB

FSL base project changelog

2112.2 (Monday 13th December 2021)

  • Fixed installation permissions on the $FSLDIR/config/depend.sh script.

2112.1 (Monday 13th December 2021)

  • Adjust the depend.mk rule to support automatic dependency generation for .cu CUDA source files.

2112.0 (Saturday 11th December 2021)

  • Add -pthread to the standard C++ compiler flags for g++.
  • Adjust the depend.mk rule to allow saving object files to a separate build directory.

2111.9 (Wednesday 8th December 2021)

  • If the ${LDFLAGS} environment variable is set in the environment, any -L options are dropped from it, so that the $FSLDEVDIR can explicitly be set to take precedence over $FSLDIR.
  • ${FSLDEVDIR} doesn't have to exist - if it is set before ${FSLDIR}/etc/fslconf/fsl-devel.sh is run, it will not be overridden.

2111.8 (Friday 26th November 2021)

  • Work around an issue with compiling against older versions of libxml++, when using -std=c++17.
  • The FSLLOCKDIR, FSLMACHINELIST, FSLREMOTECALL and FSLPARALLEL variables are not defined by default.

2111.7 (Friday 19th November 2021)

  • Fixed an issue in the construction of ${NVCCFLAGS} and ${CUDACXXFLAGS}.

2111.6 (Friday 19th November 2021)

  • New convention for compiling C++ files which are part of a CUDA library or executable, using ${CUDACXXFLAGS}.

2111.5 (Friday 19th November 2021)

  • Set -std=c++14 for nvcc-compiled code, as CUDA 11.0 is the first version to support -std=c++17, and we are targeting older CUDA versions.

2111.4 (Wednesday 17th November 2021)

  • The default C++ language standard is now -std=c++17.

2111.3 (Wednesday 17th November 2021)

  • The $FSLDEVDIR/lib directory is now added to the rpath entry for shared libraries and executables, if $FSLDEVDIR is different from $FSLDIR.

2111.2 (Monday 15th November 2021)

  • Added the FSL_GE_606 Makefile flag for use by projects which need to retain support for compiling against older versions of FSL.

2111.1 (Friday 12th November 2021)

  • Tweak to how the -install_name option is set.

2111.0 (Thursday 11th November 2021)

  • The -rpath is explicitly set on executables and shared libraries, and the -install_name set on shared libraries under macOS. This is to support local development, and execution of commands from their $FSLDIR/src/ directory.

2109.1 (Wednesday 22nd September 2021)

  • Updated the supportedGencodes.sh script for CUDA 11.2, 11.3, and 11.4.

2109.0 (Monday 13th September 2021)

  • Added an extra unit test.

2108.3 (Friday 13th August 2021)

  • Fix to the Makefile, as $FSLDIR/doc/fsl.css was not being installed.

2108.2 (Wednesday 11th August 2021)

  • Change to createFSLWrapper and removeFSLWrapper to accommodate naming conventions for FSL GUI commands (<Command>_gui on macOS, and <Command> on Linux).

2108.1 (Monday 9th August 2021)

  • Reverted the python library installation directory to $FSLDIR/python - this can be changed in the future if it is ever deemed problematic.

2108.0 (Friday 6th August 2021)

  • Added some files used by FEAT and MELODIC to generate HTML reports.
  • The $FSLDIR/etc/fslconf/fsl.sh script now uses $FSLDIR/etc/fslversion to identify official FSL installations - if this file is present, $FSLDIR/share/fsl/bin is automatically added to the $PATH variable.
  • The $FSLDIR/share/fsl/sbin/createFSLWrapper script now detects pythonw executables.

2107.3 (Monday 12th July 2021)

  • Change CUDA build configuration so that now all is needed is for nvcc to be on the $PATH, or a $NVCC variable to be set.

2107.2 (Sunday 11th July 2021)

  • Further tweaks to CUDA linking logic.

2107.1 (Friday 9th July 2021)

  • Fix an issue with CUDA linking.

2107.0 (Thursday 8th July 2021)

  • Allow CUDA projects to statically link to the CUDA runtime and toolkit components, by setting a variable CUDA_STATIC.

2106.2 (Tuesday 22nd June 2021)

  • Fixed an issue with createFSLWrapper on macOS.

2106.1 (Friday 6th June 2021)

  • Updated the supportedGencodes.sh script to add JIT targets for CUDA projects.
  • Added a Makefile.

2101.5 (Saturday 23rd January 2021)

  • Updated the supportedGencodes.sh script to support CUDA versions 10.2, 11.1 and 11.2.
  • Fixed a bug in the final creation of NVCCFLAGS and NVCCLDFLAGS.

2101.4 (Friday 22nd January 2021)

  • Fixed a bug in the default CFLAGS assignment under Linux.
  • Cleaned up and adjusted support for NVCC-compiled CUDA projects to work better within a conda build environment. May still be in a state of flux.

2101.3 (Thursday 14th January 2021)

  • The $FSLDIR/etc/fslconf/fsl.sh script now automatically adds $FSLDIR/share/fsl/bin/ to the $PATH, for official (fslinstaller-installed) FSL installations.
  • The $FSLDIR/etc/fslconf/fsl-devel.sh script now activates the $FSLDIR conda environment, for official (fslinstaller-installed) FSL installations.
  • The $FSLDIR/etc/fslconf/fsl-devel.sh script now assigns default values to $FSLDEVDIR and $FSLCONFDIR, if they are not set by the user.

2101.2 (Friday 8th January 2021)

  • Removed the legacy bin/fsl_sub script - fsl-sub is now available on conda, so can be listed as a dependency of the fsl/base project.

2101.1 (Tuesday 5th January 2021)