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Commit 206b59e3 authored by Paul McCarthy's avatar Paul McCarthy :mountain_bicyclist:
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CI: Install some more dependencies in CI env

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1 merge request!4ENH: Config file templating
#!/usr/bin/env bash
envdir=${1}
channels=(-c https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/development/
-c https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
-c conda-forge)
conda create -y ${channels[@]} \
-p ./${envdir} \
"python=${PYTHON_VERSION}" \
pytest \
coverage \
pytest-cov \
fsl-avwutils \
fsl-pyfix \
file-tree file-tree-fsl \
fsl_sub \
fsl_sub_plugin_slurm \
fsl_sub_plugin_sge
source activate ${envdir}
pip install dmri-amico
pip install git+https://git.fmrib.ox.ac.uk/ndcn0236/pipe-tree.git
#!/usr/bin/env bash
conda create \
-c https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/ \
-c conda-forge \
-p ./test.env \
"python=${PYTHON_VERSION}" \
pytest \
coverage \
pytest-cov
thisdir=$(cd $(dirname $0) & pwd)
${thisdir}/create_dev_env.sh ./test.env
source activate ./test.env
export FSLDIR=$CONDA_PREFIX
source $FSLDIR/etc/fslconf/fsl.sh
pip install --no-deps -e .
......
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