Big refactorization

.gitignore

bip/ext_wrappers/__init__.py

bip/ext_wrappers/freesurfer.py

bip/main.py

bip/pipelines/IDPs_gen/IDP_SWI_T2star.py

bip/pipelines/IDPs_gen/IDP_T1_FIRST_vols.py

bip/pipelines/IDPs_gen/IDP_T1_GM_parcellation.py

bip/pipelines/IDPs_gen/IDP_T1_SIENAX.py

bip/pipelines/IDPs_gen/IDP_T1_align_to_std.py

bip/pipelines/IDPs_gen/IDP_T1_noise_ratio.py

bip/pipelines/IDPs_gen/IDP_all_align_to_T1.py

bip/pipelines/IDPs_gen/IDP_diff_TBSS.py

bip/pipelines/IDPs_gen/IDP_diff_autoPtx.py

bip/pipelines/IDPs_gen/IDP_diff_eddy_outliers.py

bip/pipelines/IDPs_gen/IDP_func_TSNR.py

bip/pipelines/IDPs_gen/IDP_func_head_motion.py

bip/pipelines/IDPs_gen/IDP_func_task_activation.py

bip/pipelines/IDPs_gen/IDP_subject_COG_table.py

bip/pipelines/IDPs_gen/IDP_subject_centre.py

bip/pipelines/IDPs_gen/IDPs_generator.py