Merge branch 'mnt/recipe_update' into 'master'

mnt/recipe_update

See merge request !1

build.sh

@@ -3,7 +3,9 @@
 export FSLDIR=$PREFIX
 export FSLDEVDIR=$PREFIX
 
-. $FSLDIR/etc/fslconf/fsl.sh
+mkdir -p $PREFIX/src/
+cp -r $(pwd) $PREFIX/src/$PKG_NAME
+
 . $FSLDIR/etc/fslconf/fsl-devel.sh
 
 make

meta.yaml

 # This is a FSL conda recipe for:              fsl-qboot
-# The project git repository is:               git@git.fmrib.ox.ac.uk:fsl/qboot.git
-# The git repository for this conda recipe is: git@git.fmrib.ox.ac.uk:fsl/conda/fsl-qboot.git
+# The project git repository is:               https://git.fmrib.ox.ac.uk/fsl/qboot.git
+# The git repository for this conda recipe is: https://git.fmrib.ox.ac.uk/fsl/conda/fsl-qboot.git
 
 {% set name       = 'fsl-qboot' %}
-{% set version    = '2006.0' %}
-{% set repository = 'git@git.fmrib.ox.ac.uk:fsl/qboot.git' %}
+{% set version    = '2010.0' %}
+{% set repository = 'https://git.fmrib.ox.ac.uk/fsl/qboot.git' %}
+{% set build      = '0' %}
 
 package:
   name:    {{ name }}
@@ -14,23 +15,21 @@ source:
   # the FSLCONDA_REPOSITORY and FSLCONDA_REVISION
   # environment variables can be used to override
   # the repository/revision for development purposes.
-  git_url:   {{ os.environ.get("FSLCONDA_REPOSITORY", repository) }}
-  git_rev:   {{ os.environ.get("FSLCONDA_REVISION",   version) }}
-  git_depth: 1
+  git_url: {{ os.environ.get("FSLCONDA_REPOSITORY", repository) }}
+  git_rev: {{ os.environ.get("FSLCONDA_REVISION",   version) }}
 
 build:
+  number: {{ build }}
   run_exports:
     strong:
       - {{ name }}
 
 requirements:
   host:
-    - {{ compiler('cxx') }}
-    - fsl-base >=2007.0
-    - fsl-newnifti >=3.0.4
+    - {{ compiler("cxx") }}
+    - fsl-base >=2012.0
+    - make
     - fsl-armawrap >=0.4.1
-    - fsl-cprob >=2006.0
-    - fsl-miscmaths >=2001.0
-    - fsl-newimage >=2006.0
-    - fsl-utils >=1908.0
-    - fsl-znzlib >=2006.0
+    - fsl-avwutils >=2010.0
+    - fsl-fdt >=2011.0
+    - fsl-utils >=2007.0

post-link.sh

+if [ -e ${FSLDIR}/share/fsl/sbin/createFSLWrapper ]; then
+    ${FSLDIR}/share/fsl/sbin/createFSLWrapper ${SGEQBOOT} qboot qboot_parallel qboot_postproc.sh qboot_preproc.sh
+fi

pre-unlink.sh

+if [ -e ${FSLDIR}/share/fsl/sbin/removeFSLWrapper ]; then
+    ${FSLDIR}/share/fsl/sbin/removeFSLWrapper ${SGEQBOOT} qboot qboot_parallel qboot_postproc.sh qboot_preproc.sh
+fi