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Commit 6ab5c71c authored by Saad Jbabdi's avatar Saad Jbabdi
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bug bix: invwarp ref

parent bf20b386
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......@@ -1038,7 +1038,7 @@ proc fdt:apply { w dialog } {
fdt_monitor $w "${FSLDIR}/bin/convert_xfm -omat $stand2diff -inverse $diff2stand"
if { $registration(nonlin_yn) } {
fdt_monitor $w "${FSLDIR}/bin/fnirt --in=$registration(nonlin_image) --aff=$str2stand --cout=$str2stand_warp --config=T1_2_MNI152_2mm"
fdt_monitor $w "${FSLDIR}/bin/invwarp -w $str2stand_warp -o $standard2str_warp -r ${diff}_mask"
fdt_monitor $w "${FSLDIR}/bin/invwarp -w $str2stand_warp -o $standard2str_warp -r $registration(struct_image)"
fdt_monitor $w "${FSLDIR}/bin/convertwarp -o $diff2stand_warp -r ${FSLDIR}/data/standard/MNI152_T1_2mm -m $diff2str -w $str2stand_warp"
fdt_monitor $w "${FSLDIR}/bin/convertwarp -o $stand2diff_warp -r ${diff}_mask -w $stand2str_warp --postmat=$str2diff"
}
......
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