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Commit 7bb7585e authored by Saad Jbabdi's avatar Saad Jbabdi
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fix for feeds

parent 9433c64e
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......@@ -113,6 +113,7 @@ echo Queuing parallel processing stage
nslices=`${FSLDIR}/bin/fslval ${subjdir}/data dim3`
[ -f ${subjdir}.bedpostX/commands.txt ] && rm ${subjdir}.bedpostX/commands.txt
if [ "x$SGE_ROOT" = "x" ]; then
#
# Need to set off a backgrounded monitoring task
#
......@@ -181,7 +182,8 @@ do
fi
slice=$(($slice + 1))
done
bedpostid=`${FSLDIR}/bin/fsl_sub -j $preprocid -a lx24-amd64 -l ${subjdir}.bedpostX/logs -M $mailto -N bedpostx -t ${subjdir}.bedpostX/commands.txt`
bedpostid=`${FSLDIR}/bin/fsl_sub -j $preprocid -l ${subjdir}.bedpostX/logs -M $mailto -N bedpostx -t ${subjdir}.bedpostX/commands.txt`
echo Queuing post processing stage
mergeid=`${FSLDIR}/bin/fsl_sub -j $bedpostid -T 60 -m as -N bpx_postproc -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_postproc.sh $subjdir`
......
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