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Commit 7f87ecda authored by Saad Jbabdi's avatar Saad Jbabdi
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comment-out rotate_bvecs section

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......@@ -24,10 +24,10 @@ that will be used as a target to register all other volumes to. <br><br>
<b>command line utility</b><br>
<code>eddy_correct &#60;4dinput&#62; &#60;4doutput&#62; &#60;reference_no&#62;</code>
<h3>Rotating the bvecs after eddy current correction</h3>
Applying eddy current correction to diffusion data implies rotating (slightly) the data. In order to fit
a directional model to this data (e.g. DTIFIT or BEDPOSTX), you need to rotate the gradient orientations (bvecs)
using the rotations estimated by the eddy current correction. <br><br>
The following command line utility allow you to do that (modified from a script written by Martin Kavec):
<br><br>
<code>rotate_bvecs &lt;4doutput&gt;.ecclog &lt;bvecs&gt;</code>
<!-- <h3>Rotating the bvecs after eddy current correction</h3> -->
<!-- Applying eddy current correction to diffusion data implies rotating (slightly) the data. In order to fit -->
<!-- a directional model to this data (e.g. DTIFIT or BEDPOSTX), you need to rotate the gradient orientations (bvecs) -->
<!-- using the rotations estimated by the eddy current correction. <br><br> -->
<!-- The following command line utility allow you to do that (modified from a script written by Martin Kavec): -->
<!-- <br><br> -->
<!-- <code>rotate_bvecs &lt;4doutput&gt;.ecclog &lt;bvecs&gt;</code> -->
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