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doc/fdt_pipeline.html

@@ -5,7 +5,7 @@
 
 <p>A typical processing pipeline (and approximate time required for each
 stage, based on an Intel 2.4GHz processor, and a 60 direction whole brain
-dataset of dimensions 256x208x72)
+dataset of dimensions, at 2.5 mm isotropic resolution )
 would consist of:
 <ol>
 <li>Any study or scanner-specific pre-processing (e.g., averaging of multiple
@@ -14,7 +14,8 @@ done manually by the user.</li>
 <li><a href="fdt_eddy.html">Eddy current correction</a> using FDT (around 3 minutes per volume).</li>
 <li><a href="fdt_dtifit.html">DTIFit</a> - Fitting of diffusion tensors on corrected data using dtifit within FDT to check data quality (1 minute)
 <li><a href="fdt_bedpost.html">Bedpost</a> - Fitting of the probabilistic diffusion model on corrected data 
-(24 hours, or less if parallelised)</li>
+(20 hours, or less if parallelised)</li>
+<li><a href="fdt_reg.html">Registration</a> -  (3-6 minutes) </li>
 <li><a href="fdt_probtrack.html">ProbTrack</a> - Probabilistic tractography run on the outputs of bedpost (endless.. - depends very much on what the
 user wishes to do.  Generating a connectivity distribution from a single voxel
 of interest takes about 10 seconds)</li>

doc/fdt_top.html

@@ -14,6 +14,7 @@ User Guide - FDT version 1.0
 <a href="fdt_dtifit.html" target="dynamic">DtiFit</a> -
 <a href="fdt_bedpost.html" target="dynamic">Bedpost</a> -
 <a href="fdt_bedpost_parallel.html" target="dynamic">Parallelising Bedpost</a> -
+<a href="fdt_reg.html" target="dynamic">Registration</a> -
 <a href="fdt_probtrack.html" target="dynamic">Probtrack</a> -
 <a href="fdt_thresh.html" target="dynamic">proj_thresh</a> -
 <a href="fdt_biggest.html" target="dynamic">find_the_biggest</a> -