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FSL
fdt
Commits
b8d453e4
Commit
b8d453e4
authored
11 years ago
by
Moises Fernandez
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Delete cancel prepocess and reorder options print
parent
98f57485
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CUDA/bedpostx_gpu
+5
-4
5 additions, 4 deletions
CUDA/bedpostx_gpu
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5 additions
and
4 deletions
CUDA/bedpostx_gpu
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5
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4
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b8d453e4
...
...
@@ -21,7 +21,10 @@ Usage() {
echo
"expects to find bvals and bvecs in subject directory"
echo
"expects to find data and nodif_brain_mask in subject directory"
echo
"expects to find grad_dev in subject directory, if -g is set"
echo
"options (old syntax)"
echo
""
echo
"<options>:"
echo
"-NJOBS (number of jobs to queue, the data is divided in NJOBS parts, usefull for a GPU cluster, default 1)"
echo
"-Q (name of the GPU(s) queue, default cuda.q)"
echo
"-n (number of fibres per voxel, default 2)"
echo
"-w (ARD weight, more weight means less secondary fibres per voxel, default 1)"
echo
"-b (burnin period, default 1000)"
...
...
@@ -29,8 +32,6 @@ Usage() {
echo
"-s (sample every, default 25)"
echo
"-model (1 for monoexponential, 2 for multiexponential, default 1)"
echo
"-g (consider gradient nonlinearities, default off)"
echo
"-NJOBS (number of jobs to queue, the data is divided in NJOBS parts, usefull for a GPU cluster, default 1)"
echo
"-Q (name of the GPU(s) queue, default cuda.q)"
echo
""
echo
""
echo
"ALTERNATIVELY: you can pass on xfibres options onto directly bedpostx"
...
...
@@ -259,7 +260,7 @@ EOM
echo
Type
${
subjdir
}
.bedpostX/cancel to terminate all the queued tasks.
cat
<<
EOC
>
${
subjdir
}
.bedpostX/cancel
#!/bin/sh
qdel
$mergeid
$bedpostid
$preprocid
qdel
$mergeid
$bedpostid
EOC
chmod
+x
${
subjdir
}
.bedpostX/cancel
...
...
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