Skip to content
Snippets Groups Projects
Commit b8d453e4 authored by Moises Fernandez's avatar Moises Fernandez
Browse files

Delete cancel prepocess and reorder options print

parent 98f57485
No related branches found
No related tags found
No related merge requests found
......@@ -21,7 +21,10 @@ Usage() {
echo "expects to find bvals and bvecs in subject directory"
echo "expects to find data and nodif_brain_mask in subject directory"
echo "expects to find grad_dev in subject directory, if -g is set"
echo "options (old syntax)"
echo ""
echo "<options>:"
echo "-NJOBS (number of jobs to queue, the data is divided in NJOBS parts, usefull for a GPU cluster, default 1)"
echo "-Q (name of the GPU(s) queue, default cuda.q)"
echo "-n (number of fibres per voxel, default 2)"
echo "-w (ARD weight, more weight means less secondary fibres per voxel, default 1)"
echo "-b (burnin period, default 1000)"
......@@ -29,8 +32,6 @@ Usage() {
echo "-s (sample every, default 25)"
echo "-model (1 for monoexponential, 2 for multiexponential, default 1)"
echo "-g (consider gradient nonlinearities, default off)"
echo "-NJOBS (number of jobs to queue, the data is divided in NJOBS parts, usefull for a GPU cluster, default 1)"
echo "-Q (name of the GPU(s) queue, default cuda.q)"
echo ""
echo ""
echo "ALTERNATIVELY: you can pass on xfibres options onto directly bedpostx"
......@@ -259,7 +260,7 @@ EOM
echo Type ${subjdir}.bedpostX/cancel to terminate all the queued tasks.
cat <<EOC > ${subjdir}.bedpostX/cancel
#!/bin/sh
qdel $mergeid $bedpostid $preprocid
qdel $mergeid $bedpostid
EOC
chmod +x ${subjdir}.bedpostX/cancel
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment