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Commit c2da6554 authored by Moises Fernandez's avatar Moises Fernandez
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Change FSLDEVDIR path with FSLDIR

parent f42bb6de
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...@@ -4,7 +4,7 @@ ...@@ -4,7 +4,7 @@
# #
# SHCOPYRIGHT # SHCOPYRIGHT
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${FSLDEVDIR}/lib:${CUDA}/lib64 export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${FSLDIR}/lib:${CUDA}/lib64
export DYLD_LIBRARY_PATH=$LD_LIBRARY_PATH export DYLD_LIBRARY_PATH=$LD_LIBRARY_PATH
Usage() { Usage() {
...@@ -156,7 +156,7 @@ while [ $part -lt $njobs ];do ...@@ -156,7 +156,7 @@ while [ $part -lt $njobs ];do
gopts=$opts gopts=$opts
fi fi
string=$(bsub -o ${subjdir}.bedpostX/logs/log$partzp -e ${subjdir}.bedpostX/logs/error$partzp -W 2:00 -n 1 ${FSLDEVDIR}/bin/xfibres_gpu --data=${subjdir}/data --mask=$subjdir.bedpostX/nodif_brain_mask -b ${subjdir}.bedpostX/bvals -r ${subjdir}.bedpostX/bvecs --forcedir --logdir=$subjdir.bedpostX/diff_parts/data_part_$partzp $gopts ${subjdir} $part $njobs) string=$(bsub -o ${subjdir}.bedpostX/logs/log$partzp -e ${subjdir}.bedpostX/logs/error$partzp -W 2:00 -n 1 ${FSLDIR}/bin/xfibres_gpu --data=${subjdir}/data --mask=$subjdir.bedpostX/nodif_brain_mask -b ${subjdir}.bedpostX/bvals -r ${subjdir}.bedpostX/bvecs --forcedir --logdir=$subjdir.bedpostX/diff_parts/data_part_$partzp $gopts ${subjdir} $part $njobs)
array=(`echo $string | tr "<" ' '`) array=(`echo $string | tr "<" ' '`)
aux=${array[1]} aux=${array[1]}
array=(`echo $aux | tr ">" ' '`) array=(`echo $aux | tr ">" ' '`)
...@@ -174,7 +174,7 @@ while [ $part -lt $njobs ];do ...@@ -174,7 +174,7 @@ while [ $part -lt $njobs ];do
done done
nvox=`${FSLDIR}/bin/fslstats $subjdir.bedpostX/nodif_brain_mask -V | cut -d ' ' -f1 ` nvox=`${FSLDIR}/bin/fslstats $subjdir.bedpostX/nodif_brain_mask -V | cut -d ' ' -f1 `
post_string=$post_string" ${FSLDEVDIR}/bin/bedpostx_postproc_gpu.sh --data=${subjdir}/data --mask=$subjdir.bedpostX/nodif_brain_mask -b ${subjdir}.bedpostX/bvals -r ${subjdir}.bedpostX/bvecs --forcedir --logdir=$subjdir.bedpostX/diff_parts $gopts $nvox $njobs ${subjdir}" post_string=$post_string" ${FSLDIR}/bin/bedpostx_postproc_gpu.sh --data=${subjdir}/data --mask=$subjdir.bedpostX/nodif_brain_mask -b ${subjdir}.bedpostX/bvals -r ${subjdir}.bedpostX/bvecs --forcedir --logdir=$subjdir.bedpostX/diff_parts $gopts $nvox $njobs ${subjdir}"
$post_string $post_string
......
...@@ -13,7 +13,7 @@ do ...@@ -13,7 +13,7 @@ do
fi fi
done done
${FSLDEVDIR}/bin/merge_parts_gpu $@ ${FSLDIR}/bin/merge_parts_gpu $@
fib=1 fib=1
while [ $fib -le $numfib ] while [ $fib -le $numfib ]
......
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