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Commit ef829221 authored by Moises Fernandez's avatar Moises Fernandez
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Calculate the number of slices if FILTERING MODE

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with 7 additions and 2 deletions
rubix_parallel.sh
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...@@ -186,8 +186,13 @@ mkdir -p ${subjdir}.rubiX ...@@ -186,8 +186,13 @@ mkdir -p ${subjdir}.rubiX
mkdir -p ${subjdir}.rubiX/diff_slices mkdir -p ${subjdir}.rubiX/diff_slices
mkdir -p ${subjdir}.rubiX/logs mkdir -p ${subjdir}.rubiX/logs
nslices=`$FSLDIR/bin/fslval $dataLR dim3` nslices=0
if [ ${filterflag} -eq 1 ]; then
nslicesHR=`$FSLDIR/bin/fslval ${subjdir}/data dim3`
nslices=$((${nslicesHR}/2))
else
nslices=`$FSLDIR/bin/fslval ${subjdir}/dataLR dim3`
fi
echo Queuing preprocessing stage echo Queuing preprocessing stage
preprocid=`$FSLDIR/bin/fsl_sub -T 60 -R 8000 -N rubix_pre -l ${subjdir}.rubiX/logs $script_dir/rubix_preproc.sh ${subjdir} ${filterflag} ${gflag}` preprocid=`$FSLDIR/bin/fsl_sub -T 60 -R 8000 -N rubix_pre -l ${subjdir}.rubiX/logs $script_dir/rubix_preproc.sh ${subjdir} ${filterflag} ${gflag}`
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