mods to remove shell comment directives from bedpost

bedpostx

@@ -104,7 +104,7 @@ mkdir -p ${subjdir}.bedpostX/xfms
 
 mailto=`whoami`@fmrib.ox.ac.uk
 echo Queuing preprocessing stages
-preprocid=`${FSLDIR}/bin/fsl_sub -F -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_preproc.sh ${subjdir}`
+preprocid=`${FSLDIR}/bin/fsl_sub -T 60 -m as -N bpx_preproc -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_preproc.sh ${subjdir}`
 
 echo Queuing parallel processing stage
 nslices=`${FSLDIR}/bin/fslval ${subjdir}/data dim3`
@@ -146,7 +146,7 @@ bedpostid=`${FSLDIR}/bin/fsl_sub -j $preprocid -l ${subjdir}.bedpostX/logs -M $m
 [ "x$SGE_ROOT" = "x" ] && kill $monitorpid
 
 echo Queuing post processing stage
-mergeid=`${FSLDIR}/bin/fsl_sub -j $bedpostid -F -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_postproc.sh $subjdir`
+mergeid=`${FSLDIR}/bin/fsl_sub -j $bedpostid -T 60 -m as -N bpx_postproc -l ${subjdir}.bedpostX/logs ${FSLDIR}/bin/bedpostx_postproc.sh $subjdir`
 
 if [ "x$SGE_ROOT" != "x" ]; then
     echo

bedpostx_postproc.sh

 #!/bin/sh
 
-#$ -cwd
-#$ -q short.q
-#$ -S /bin/sh
-#$ -V
-#$ -N bpx_postproc
-#$ -m ae
-
 subjdir=$1
 
 numfib=`${FSLDIR}/bin/imglob -oneperimage ${subjdir}.bedpostX/diff_slices/data_slice_0000/f*samples | wc -w | awk '{print $1}'`

bedpostx_preproc.sh

 #!/bin/sh
 
-#$ -cwd
-#$ -q short.q
-#$ -S /bin/sh
-#$ -V
-#$ -N bpx_preproc
-#$ -m as
-
 subjdir=$1
 
 echo Copying files to bedpost directory

bedpostx_single_slice.sh

 #!/bin/sh
 
-#$ -cwd 
-#$ -q long.q
-#$ -S /bin/sh
-#$ -V
-#$ -N bedpostx
-#$ -m n
-#$ -o $1.bedpostX/logs -e $1.bedpostX/logs
-
 subjdir=$1
 nfibres=$2
 fudge=$3
@@ -16,7 +8,6 @@ njumps=$5
 sampleevery=$6
 slice=$7
 
-
 slicezp=`${FSLDIR}/bin/zeropad $slice 4`
 
 ${FSLDIR}/bin/xfibres\