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/* FilmOlsOptions.h
Mark Woolrich, FMRIB Image Analysis Group
Copyright (C) 1999-2000 University of Oxford */
/* CCOPYRIGHT */
#if !defined(__FilmOlsOptions_h)
#define __FilmOlsOptions_h
#include <string>
#include <math.h>
#include <iostream.h>
#include <fstream.h>
#include <stdlib.h>
#include <stdio.h>
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class FilmOlsOptions {
public:
static FilmOlsOptions& getInstance();
~FilmOlsOptions() { delete gopt; }
string inputfname;
string paradigmfname;
string datadir;
string epifname;
string susanpath;
bool verbose;
bool detrend;
bool smoothACEst;
bool fitAutoRegressiveModel;
bool globalEst;
bool prewhiten;
bool noest;
int trimscans;
int thresh;
int ms;
int epith;
short maxshort;
void parse_command_line(int argc, char** argv, ofstream& logfile);
private:
FilmOlsOptions();
const FilmOlsOptions& operator=(FilmOlsOptions&);
FilmOlsOptions(FilmOlsOptions&);
static FilmOlsOptions* gopt;
void print_usage(int argc, char *argv[]);
};
inline FilmOlsOptions& FilmOlsOptions::getInstance(){
if(gopt == NULL)
gopt = new FilmOlsOptions();
return *gopt;
}
inline FilmOlsOptions::FilmOlsOptions()
{
// set up defaults
datadir = "results";
epifname = "epivolume";
inputfname = "";
paradigmfname = "";
susanpath = "/usr/local/fsl/bin/susan_smooth";
thresh = 0;
ms = 4;
epith = 100;
maxshort = 32000;
fitAutoRegressiveModel = false;
prewhiten = false;
smoothACEst = false;
verbose = false;
detrend = false;
globalEst = false;
noest = false;
}