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Mark Jenkinson authoredMark Jenkinson authored
FilmGlsOptionsRes.h 2.09 KiB
/* FilmGlsOptionsRes.h
Mark Woolrich, FMRIB Image Analysis Group
Copyright (C) 1999-2000 University of Oxford */
/* CCOPYRIGHT */
#if !defined(__FilmGlsOptionsRes_h)
#define __FilmGlsOptionsRes_h
#include <string>
#include <math.h>
#include <iostream>
#include <fstream>
#include <stdlib.h>
#include <stdio.h>
namespace FILM {
class FilmGlsOptionsRes {
public:
static FilmGlsOptionsRes& getInstance();
~FilmGlsOptionsRes() { delete gopt; }
string inputfname;
string paradigmfname;
string contrastfname;
string epifname;
string datadir;
string susanpath;
string neffsfname;
string zscoresfname;
bool verbose;
bool verbose_dms;
bool rand;
bool detrend;
bool smoothACEst;
bool fitAutoRegressiveModel;
bool tukey;
bool pava;
bool multitaper;
bool highfreqremoval;
bool justprewhiten;
int numiters;
int tukeysize;
float multitapersize;
bool noest;
int trimscans;
int thresh;
int ms;
int numrand;
short maxshort;
int epith;
void parse_command_line(int argc, char** argv, ofstream& logfile);
private:
FilmGlsOptionsRes();
const FilmGlsOptionsRes& operator=(FilmGlsOptionsRes&);
FilmGlsOptionsRes(FilmGlsOptionsRes&);
static FilmGlsOptionsRes* gopt;
void print_usage(int argc, char *argv[]);
};
inline FilmGlsOptionsRes& FilmGlsOptionsRes::getInstance(){
if(gopt == NULL)
gopt = new FilmGlsOptionsRes();
return *gopt;
}
inline FilmGlsOptionsRes::FilmGlsOptionsRes()
{
// set up defaults
zscoresfname = "zstats";
neffsfname = "neffs";
datadir = "results";
susanpath = "/usr/local/fsl/bin/susan_smooth";
epifname = "epivolume";
thresh = 0;
contrastfname = "";
inputfname = "";
paradigmfname = "";
epith = 0;
numrand = 0;
ms = 4;
maxshort = 32000;
fitAutoRegressiveModel = false;
tukeysize = 0;
multitapersize = 4.0;
highfreqremoval = false;
numiters = 1;
smoothACEst = false;
verbose = false;
verbose_dms = false;
rand = false;
detrend = false;
pava = false;
tukey = true;
multitaper = false;
noest = false;
justprewhiten = false;
}
}
#endif