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FSL
fslpy
Commits
019f8d81
Commit
019f8d81
authored
Nov 12, 2021
by
Paul McCarthy
🚵
Browse files
DOC: changelog
parent
5bbde65b
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CHANGELOG.rst
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019f8d81
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@@ -2,8 +2,8 @@ This document contains the ``fslpy`` release history in reverse chronological
order.
3.
8.0 (Under development
)
-------------------------
3.
7.1 (Friday 12th November 2021
)
-------------------------
--------
Changed
...
...
@@ -11,7 +11,15 @@ Changed
* BIDS and ``dcm2niix`` ``.json`` sidecar files with control characters
are now accepted.
are now accepted (!312).
Fixed
^^^^^
* Fixed an issue with temporary input files created by :mod:`fsl.wrappers`
functions not being deleted (!313).
3.7.0 (Friday 20th August 2021)
...
...
@@ -23,7 +31,7 @@ Added
* New :mod:`fsl.wrappers.fsl_sub` wrapper function for the ``fsl_sub``
command.
command
(!309)
.
Changed
...
...
@@ -32,19 +40,19 @@ Changed
* Performance of the :mod:`.imglob`, :mod:`.imln`, :mod:`imtest`, :mod:`.imrm`
and :mod:`.remove_ext` scripts has been improved, by re-organising them to
avoid unnecessary and expensive imports such as ``numpy``.
avoid unnecessary and expensive imports such as ``numpy``
(!310)
.
* The default behaviour of the :func:`fsl.utils.run.run` function (and hence
that of all :mod:`fsl.wrappers` functions) has been changed so that the
standard output and error of the called command is now forwarded to the
calling Python process, in addition to being returned from ``run`` as
strings. In other words, the default behaviour of ``run('cmd')``, is now
equivalent to ``run('cmd', log={"tee":True})``. The previous default
behaviour can be achieved with ``run('cmd', log={"tee":False})``.
behaviour can be achieved with ``run('cmd', log={"tee":False})``
(!309)
.
* The :func:`fsl.utils.run.run` and :func:`fsl.utils.run.runfsl` functions
(and hence all :mod:`fsl.wrappers` functions) have been modified to use
``fsl.wrappers.fsl_sub`` instead of ``fsl.utils.fslsub.submit``. This is an
internal change which should not affect the usage of the ``run``, ``runfsl``
or wrapper functions.
or wrapper functions
(!309)
.
Deprecated
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@@ -53,10 +61,10 @@ Deprecated
* :class:`fsl.utils.fslsub.SubmitParams` and :func:`fsl.utils.fslsub.submit`
have been deprecated in favour of using the ``fsl.wrappers.fsl_sub`` wrapper
function.
function
(!309)
.
* The :func:`fsl.utils.fslsub.info` function has been deprecated in favour of
using the ``fsl_sub.report`` function, from the separate `fsl_sub
<https://git.fmrib.ox.ac.uk/fsl/fsl_sub>`_ Python library.
<https://git.fmrib.ox.ac.uk/fsl/fsl_sub>`_ Python library
(!309)
.
3.6.4 (Tuesday 3rd August 2021)
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