remove references of wait from tests, run.py and documentation

fsl/utils/fslsub.py

@@ -9,7 +9,7 @@ line tool. It is assumed that the computing cluster is managed by SGE.
 
 Example usage, building a short pipeline::
 
-    from fsl.utils.fslsub import submit, wait
+    from fsl.utils.fslsub import submit
 
     # submits bet to veryshort queue unless <mask_filename> already exists
     bet_job = submit('bet <input_filename> -m',
@@ -26,16 +26,12 @@ Example usage, building a short pipeline::
                       wait_for=(bet_job, other_job),
                       queue='cuda.q')
 
-    # waits for the cuda job to finish
-    wait(cuda_job)
-
 .. autosummary::
    :nosignatures:
 
    submit
    info
    output
-   wait
    func_to_cmd
 """
 

fsl/utils/run.py

@@ -15,7 +15,6 @@
 
    run
    runfsl
-   wait
    dryrun
 """
 
@@ -423,8 +422,3 @@ def wslcmd(cmdpath, *args):
     else:
         # Command was not found in WSL with this path
         return None
-
-
-def wait(job_ids):
-    """Proxy for :func:`.fslsub.wait`. """
-    return fslsub.wait(job_ids)

tests/test_fslsub.py

@@ -101,7 +101,6 @@ def test_submit():
         os.chmod(cmd, 0o755)
 
         jid = fslsub.submit(cmd)
-        fslsub.wait(jid)
         stdout, stderr = fslsub.output(jid)
 
         assert stdout.strip() == 'standard output'
@@ -184,8 +183,6 @@ def test_func_to_cmd():
         cmd = fslsub.func_to_cmd(myfunc, (), {})
         jid = fslsub.submit(cmd)
 
-        fslsub.wait(jid)
-
         stdout, stderr = fslsub.output(jid)
 
         assert stdout.strip() == 'standard output'