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FSL
fslpy
Commits
55b814ce
Commit
55b814ce
authored
Apr 01, 2019
by
Paul McCarthy
🚵
Browse files
DOC: Various fixes
parent
1ca2a7bb
Changes
4
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doc/fsl.utils.tempdir.rst
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55b814ce
``fsl.utils.temdir``
====================
``fsl.utils.tem
p
dir``
====================
=
.. automodule:: fsl.utils.tempdir
:members:
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doc/fsl.wrappers.fsl_anat.rst
0 → 100644
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55b814ce
``fsl.wrappers.fsl_anat``
=========================
.. automodule:: fsl.wrappers.fsl_anat
:members:
:undoc-members:
:show-inheritance:
doc/fsl.wrappers.rst
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55b814ce
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@@ -10,6 +10,7 @@
fsl.wrappers.flirt
fsl.wrappers.fnirt
fsl.wrappers.fslmaths
fsl.wrappers.fsl_anat
fsl.wrappers.fugue
fsl.wrappers.melodic
fsl.wrappers.misc
...
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fsl/wrappers/wrapperutils.py
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55b814ce
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@@ -10,7 +10,7 @@
functions.
The :func:`cmdwrapper` and :func:`fslwrapper` functions are conenience
The :func:`cmdwrapper` and :func:`fslwrapper` functions are con
v
enience
decorators which allow you to write your wrapper function such that it simply
generates the command-line needed to respectively run a standard shell
command or a FSL command. For example::
...
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@@ -39,7 +39,7 @@ patterns. For example::
The :func:`fileOrImage` and :func:`fileOrArray` functions can be used to
decorate a wrapper function such that in-memory ``nibabel`` images or Numpy
arrays can be passed in as arguments - they will be automatically saved out to
files, and then the file names passed into the wrapper function. For ex
m
aple::
files, and then the file names passed into the wrapper function. For exa
m
ple::
@fileOrImage('src', 'ref')
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@@ -225,18 +225,18 @@ def applyArgStyle(style,
========= ========== ===========================
``style`` ``valsep`` Result
========= ========== ===========================
``'-'`` ' '
``-name val1 val2 val3``
``'-'`` '"'
``-name "val1 val2 val3"``
``'-'`` ','
``-name val1,val2,val3``
``'--'`` ' '
``--name val1 val2 val3``
``'--'`` '"'
``--name "val1 val2 val3"``
``'--'`` ','
``--name val1,val2,val3``
``'-='`` ' '
Not supported
``'-='`` '"'
``-name="val1 val2 val3"``
``'-='`` ','
``-name=val1,val2,val3``
``'--='`` ' '
Not supported
``'--='`` '"'
``--name="val1 val2 val3"``
``'--='`` ','
``--name=val1,val2,val3``
``'-'``
``
' '
``
``-name val1 val2 val3``
``'-'``
``
'"'
``
``-name "val1 val2 val3"``
``'-'``
``
','
``
``-name val1,val2,val3``
``'--'``
``
' '
``
``--name val1 val2 val3``
``'--'``
``
'"'
``
``--name "val1 val2 val3"``
``'--'``
``
','
``
``--name val1,val2,val3``
``'-='``
``
' '
``
Not supported
``'-='``
``
'"'
``
``-name="val1 val2 val3"``
``'-='``
``
','
``
``-name=val1,val2,val3``
``'--='``
``
' '
``
Not supported
``'--='``
``
'"'
``
``--name="val1 val2 val3"``
``'--='``
``
','
``
``--name=val1,val2,val3``
========= ========== ===========================
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