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FSL
fslpy
Commits
56fb1bd7
Commit
56fb1bd7
authored
10 years ago
by
Paul McCarthy
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Arbitrary data associated with an Image may be stored in the Image object.
parent
8de1ae64
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1 changed file
fsl/data/fslimage.py
+33
-16
33 additions, 16 deletions
fsl/data/fslimage.py
with
33 additions
and
16 deletions
fsl/data/fslimage.py
+
33
−
16
View file @
56fb1bd7
...
@@ -48,23 +48,36 @@ class Image(object):
...
@@ -48,23 +48,36 @@ class Image(object):
xdim
,
ydim
,
zdim
=
self
.
nibImage
.
get_shape
()
xdim
,
ydim
,
zdim
=
self
.
nibImage
.
get_shape
()
xlen
,
ylen
,
zlen
=
self
.
nibImage
.
get_header
().
get_zooms
()
xlen
,
ylen
,
zlen
=
self
.
nibImage
.
get_header
().
get_zooms
()
self
.
xdim
=
xdim
self
.
xdim
=
xdim
self
.
ydim
=
ydim
self
.
ydim
=
ydim
self
.
zdim
=
zdim
self
.
zdim
=
zdim
self
.
xlen
=
xlen
self
.
xlen
=
xlen
self
.
ylen
=
ylen
self
.
ylen
=
ylen
self
.
zlen
=
zlen
self
.
zlen
=
zlen
# ImageDisplay instance used to describe
# ImageDisplay instance used to describe
# how this image is to be displayed
# how this image is to be displayed
self
.
display
=
ImageDisplay
(
self
)
self
.
display
=
ImageDisplay
(
self
)
# This attribute may be used to point to an OpenGL
# This dictionary may be used to store
# buffer which is to be shared between multiple users
# arbitrary data associated with this image.
# (e.g. two SliceCanvas instances which are displaying
self
.
_attributes
=
{}
# a different view of the same image)
self
.
glBuffer
=
None
def
getAttribute
(
self
,
name
):
"""
Retrieve the attribute with the given name.
"""
return
self
.
_attributes
[
name
]
def
setAttribute
(
self
,
name
,
value
):
"""
Set an attribute with the given name and the given value.
"""
self
.
_attributes
[
name
]
=
value
class
ImageDisplay
(
props
.
HasProperties
):
class
ImageDisplay
(
props
.
HasProperties
):
...
@@ -72,6 +85,8 @@ class ImageDisplay(props.HasProperties):
...
@@ -72,6 +85,8 @@ class ImageDisplay(props.HasProperties):
A class which describes how an image should be displayed. There should
A class which describes how an image should be displayed. There should
be no need to manually instantiate ImageDisplay objects - one is created
be no need to manually instantiate ImageDisplay objects - one is created
for each Image object, and is accessed via the Image.display attribute.
for each Image object, and is accessed via the Image.display attribute.
If a single image needs to be displayed in different ways, then create
away, and manage your own ImageDisplay objects.
"""
"""
def
updateColourMap
(
self
,
newVal
):
def
updateColourMap
(
self
,
newVal
):
...
@@ -90,7 +105,7 @@ class ImageDisplay(props.HasProperties):
...
@@ -90,7 +105,7 @@ class ImageDisplay(props.HasProperties):
cmap
.
set_under
(
cmap
(
0.0
),
alpha
=
1.0
)
cmap
.
set_under
(
cmap
(
0.0
),
alpha
=
1.0
)
cmap
.
set_over
(
cmap
(
1.0
),
alpha
=
1.0
)
cmap
.
set_over
(
cmap
(
1.0
),
alpha
=
1.0
)
# The display properties of an image
enabled
=
props
.
Boolean
(
default
=
True
)
enabled
=
props
.
Boolean
(
default
=
True
)
alpha
=
props
.
Double
(
minval
=
0.0
,
maxval
=
1.0
,
default
=
1.0
)
alpha
=
props
.
Double
(
minval
=
0.0
,
maxval
=
1.0
,
default
=
1.0
)
displayMin
=
props
.
Double
()
displayMin
=
props
.
Double
()
...
@@ -140,16 +155,19 @@ class ImageList(object):
...
@@ -140,16 +155,19 @@ class ImageList(object):
changes (e.g. an image is added or removed).
changes (e.g. an image is added or removed).
"""
"""
def
__init__
(
self
,
images
=
None
):
def
__init__
(
self
,
images
=
None
):
"""
"""
Create an ImageList object from the given sequence of Image objects.
"""
"""
if
images
is
None
:
images
=
[]
if
images
is
None
:
images
=
[]
if
not
isinstance
(
images
,
collections
.
Iterable
):
if
not
isinstance
(
images
,
collections
.
Iterable
):
raise
TypeError
(
'
images must be a sequence of images
'
)
raise
TypeError
(
'
images must be a sequence of images
'
)
if
not
all
(
map
(
lambda
img
:
isinstance
(
img
,
Image
),
images
)):
raise
TypeError
(
'
images must be a sequence of images
'
)
self
.
_images
=
images
self
.
_images
=
images
self
.
_listeners
=
[]
self
.
_listeners
=
[]
...
@@ -159,7 +177,7 @@ class ImageList(object):
...
@@ -159,7 +177,7 @@ class ImageList(object):
def
__iter__
(
self
):
return
self
.
_images
.
__iter__
()
def
__iter__
(
self
):
return
self
.
_images
.
__iter__
()
def
__contains__
(
self
,
image
):
return
self
.
_images
.
__contains__
(
image
)
def
__contains__
(
self
,
image
):
return
self
.
_images
.
__contains__
(
image
)
def
append
(
self
,
image
):
def
append
(
self
,
image
):
self
.
_images
.
append
(
image
)
self
.
_images
.
append
(
image
)
self
.
notify
()
self
.
notify
()
...
@@ -186,4 +204,3 @@ class ImageList(object):
...
@@ -186,4 +204,3 @@ class ImageList(object):
def
notify
(
self
):
def
notify
(
self
):
for
listener
in
self
.
_listeners
:
for
listener
in
self
.
_listeners
:
listener
(
self
)
listener
(
self
)
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