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FSL
fslpy
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75a2eea6
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75a2eea6
authored
6 years ago
by
Paul McCarthy
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note in wrapper docs about submit argument
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75a2eea6
...
@@ -13,6 +13,18 @@ For example, you can call BET like so::
...
@@ -13,6 +13,18 @@ For example, you can call BET like so::
from fsl.wrappers import bet
from fsl.wrappers import bet
bet(
'
struct
'
,
'
struct_brain
'
)
bet(
'
struct
'
,
'
struct_brain
'
)
If you would like a command to be submitted as a cluster job, all wrappers
accept a ``submit`` keyword argument, which may be given a value of ``True``
indicating that the job should be submitted with default settings, or a
dictionary with submission settings::
from fsl.wrappers import fnirt
fnirt(
'
srf
'
,
'
ref
'
,
'
out
'
, submit=True)
fnirt(
'
srf
'
,
'
ref
'
,
'
out
'
, submit={
'
queue
'
:
'
long.q
'
,
'
ram
'
:
'
4GB
'
})
See the :mod:`.fslsub` module for more details.
Most of these wrapper functions strive to provide an interface which is as
Most of these wrapper functions strive to provide an interface which is as
close as possible to the underlying command-line tool. Most functions use
close as possible to the underlying command-line tool. Most functions use
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