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Commit 7c3ca51d authored by Paul McCarthy's avatar Paul McCarthy 🚵
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TEST: Update filetree query tests

parent d7202e8f
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tests/test_filetree/test_query.py
View file @ 7c3ca51d
......@@ -52,7 +52,7 @@ def _test_data():
yield
def _expected_matches(short_name, **kwargs):
def _expected_matches(template, tree, **kwargs):
matches = []
subjs = kwargs.get('participant', _subjs)
......@@ -64,18 +64,20 @@ def _expected_matches(short_name, **kwargs):
sesdir = op.join('subj-{}'.format(subj), 'ses-{}'.format(ses))
if short_name in ('T1w', 'T2w'):
f = op.join(sesdir, '{}.nii.gz'.format(short_name))
if template in ('T1w', 'T2w'):
f = op.join(sesdir, '{}.nii.gz'.format(template))
matches.append(ftquery.Match(f,
short_name,
template,
tree,
{'participant' : subj,
'session' : ses}))
elif short_name == 'surface':
elif template == 'surface':
for hemi, surf in it.product(hemis, surfs):
f = op.join(sesdir, '{}.{}.gii'.format(hemi, surf))
matches.append(ftquery.Match(f,
short_name,
template,
tree,
{'participant' : subj,
'session' : ses,
'hemi' : hemi,
......@@ -84,19 +86,19 @@ def _expected_matches(short_name, **kwargs):
return matches
def _run_and_check_query(query, short_name, asarray=False, **vars):
def _run_and_check_query(query, template, asarray=False, **vars):
gotmatches = query.query( short_name, asarray=asarray, **vars)
expmatches = _expected_matches(short_name, **{k : [v]
for k, v
in vars.items()})
gotmatches = query.query( template, asarray=asarray, **vars)
expmatches = _expected_matches(template, query.tree, **{k : [v]
for k, v
in vars.items()})
if not asarray:
assert len(gotmatches) == len(expmatches)
for got, exp in zip(sorted(gotmatches), sorted(expmatches)):
assert got == exp
else:
snvars = query.variables(short_name)
snvars = query.variables(template)
assert len(snvars) == len(gotmatches.shape)
......@@ -108,7 +110,7 @@ def _run_and_check_query(query, short_name, asarray=False, **vars):
for expmatch in expmatches:
slc = []
for var in query.axes(short_name):
for var in query.axes(template):
if var not in vars or vars[var] == '*':
vidx = snvars[var].index(expmatch.variables[var])
slc.append(vidx)
......@@ -128,7 +130,7 @@ def test_query_properties():
'participant',
'session',
'surf']
assert sorted(query.short_names) == ['T1w', 'T2w', 'surface']
assert sorted(query.templates) == ['T1w', 'T2w', 'surface']
assert query.variables('T1w') == {'participant' : ['01', '02', '03'],
'session' : ['1', '2']}
......@@ -318,7 +320,7 @@ def test_query_subtree():
tree = filetree.FileTree.read('tree1.tree', '.')
query = filetree.FileTreeQuery(tree)
assert sorted(query.short_names) == ['T1w', 'surface']
assert sorted(query.templates) == ['T1w', 'surfdir/surface']
qvars = query.variables()
assert sorted(qvars.keys()) == ['hemi', 'participant', 'surf']
......@@ -330,7 +332,7 @@ def test_query_subtree():
assert sorted(qvars.keys()) == ['participant']
assert qvars['participant'] == ['01', '02', '03']
qvars = query.variables('surface')
qvars = query.variables('surfdir/surface')
assert sorted(qvars.keys()) == ['hemi', 'participant', 'surf']
assert qvars['hemi'] == ['L', 'R']
assert qvars['participant'] == ['01', '02', '03']
......@@ -346,7 +348,7 @@ def test_query_subtree():
assert [m.filename for m in sorted(got)] == [
op.join('subj-01', 'T1w.nii.gz')]
got = query.query('surface')
got = query.query('surfdir/surface')
assert [m.filename for m in sorted(got)] == [
op.join('subj-01', 'surf', 'L.pial.gii'),
op.join('subj-01', 'surf', 'L.white.gii'),
......@@ -361,7 +363,7 @@ def test_query_subtree():
op.join('subj-03', 'surf', 'R.pial.gii'),
op.join('subj-03', 'surf', 'R.white.gii')]
got = query.query('surface', hemi='L')
got = query.query('surfdir/surface', hemi='L')
assert [m.filename for m in sorted(got)] == [
op.join('subj-01', 'surf', 'L.pial.gii'),
op.join('subj-01', 'surf', 'L.white.gii'),
......@@ -370,7 +372,7 @@ def test_query_subtree():
op.join('subj-03', 'surf', 'L.pial.gii'),
op.join('subj-03', 'surf', 'L.white.gii')]
got = query.query('surface', surf='white')
got = query.query('surfdir/surface', surf='white')
assert [m.filename for m in sorted(got)] == [
op.join('subj-01', 'surf', 'L.white.gii'),
op.join('subj-01', 'surf', 'R.white.gii'),
......@@ -394,16 +396,17 @@ def test_scan():
t1wf = op.join(sesdir, 'T1w.nii.gz')
t2wf = op.join(sesdir, 'T2w.nii.gz')
expmatches.append(ftquery.Match(t1wf, 'T1w', {'participant' : subj,
'session' : ses}))
expmatches.append(ftquery.Match(t2wf, 'T2w', {'participant' : subj,
'session' : ses}))
expmatches.append(ftquery.Match(t1wf, 'T1w', tree, {'participant' : subj,
'session' : ses}))
expmatches.append(ftquery.Match(t2wf, 'T2w', tree, {'participant' : subj,
'session' : ses}))
for hemi, surf in it.product(_hemis, _surfs):
surff = op.join(sesdir, '{}.{}.gii'.format(hemi, surf))
expmatches.append(ftquery.Match(surff,
'surface',
tree,
{'participant' : subj,
'session' : ses,
'surf' : surf,
......@@ -414,7 +417,7 @@ def test_scan():
for got, exp in zip(sorted(gotmatches), sorted(expmatches)):
assert got.filename == exp.filename
assert got.short_name == exp.short_name
assert got.template == exp.template
assert got.variables == exp.variables
......
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