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FSL
fslpy
Commits
898c1f92
Commit
898c1f92
authored
6 years ago
by
Paul McCarthy
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TEST: Extend tests for chained decorators
parent
bc8cfc4c
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tests/test_wrapperutils.py
+76
-9
76 additions, 9 deletions
tests/test_wrapperutils.py
with
76 additions
and
9 deletions
tests/test_wrapperutils.py
+
76
−
9
View file @
898c1f92
...
...
@@ -497,24 +497,91 @@ def test_fileOrThing_outprefix_directory():
def
test_chained_fileOrImageAndArray
():
@wutils.fileOrImage
(
'
image
'
)
@wutils.fileOrArray
(
'
array
'
)
def
func
(
image
,
array
):
nib
.
load
(
image
)
np
.
loadtxt
(
array
)
@wutils.fileOrImage
(
'
image
'
,
'
outimage
'
)
@wutils.fileOrArray
(
'
array
'
,
'
outarray
'
)
def
func
(
image
,
array
,
outimage
,
outarray
):
image
=
nib
.
load
(
image
)
array
=
np
.
loadtxt
(
array
)
outimg
=
nib
.
nifti1
.
Nifti1Image
(
image
.
get_data
()
*
2
,
np
.
eye
(
4
))
np
.
savetxt
(
outarray
,
array
*
2
)
outimg
.
to_filename
(
outimage
)
image
=
nib
.
nifti1
.
Nifti1Image
(
np
.
array
([[
1
,
2
],
[
3
,
4
]]),
np
.
eye
(
4
))
array
=
np
.
array
([[
5
,
6
,
7
,
8
]])
expimg
=
nib
.
nifti1
.
Nifti1Image
(
image
.
get_data
()
*
2
,
np
.
eye
(
4
))
exparr
=
array
*
2
with
tempdir
.
tempdir
():
nib
.
save
(
image
,
'
image.nii
'
)
np
.
savetxt
(
'
array.txt
'
,
array
)
func
(
'
image.nii
'
,
'
array.txt
'
)
func
(
'
image.nii
'
,
array
)
func
(
image
,
'
array.txt
'
)
func
(
image
,
array
)
func
(
'
image.nii
'
,
'
array.txt
'
,
'
outimg.nii
'
,
'
outarr.txt
'
)
assert
np
.
all
(
nib
.
load
(
'
outimg.nii
'
).
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
np
.
loadtxt
(
'
outarr.txt
'
)
==
exparr
)
func
(
'
image.nii
'
,
array
,
'
outimg.nii
'
,
'
outarr.txt
'
)
assert
np
.
all
(
nib
.
load
(
'
outimg.nii
'
).
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
np
.
loadtxt
(
'
outarr.txt
'
)
==
exparr
)
func
(
image
,
'
array.txt
'
,
'
outimg.nii
'
,
'
outarr.txt
'
)
assert
np
.
all
(
nib
.
load
(
'
outimg.nii
'
).
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
np
.
loadtxt
(
'
outarr.txt
'
)
==
exparr
)
func
(
image
,
array
,
'
outimg.nii
'
,
'
outarr.txt
'
)
assert
np
.
all
(
nib
.
load
(
'
outimg.nii
'
).
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
np
.
loadtxt
(
'
outarr.txt
'
)
==
exparr
)
res
=
func
(
image
,
array
,
wutils
.
LOAD
,
'
outarr.txt
'
)
assert
np
.
all
(
res
[
'
outimage
'
].
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
np
.
loadtxt
(
'
outarr.txt
'
)
==
exparr
)
res
=
func
(
image
,
array
,
'
outimg.nii
'
,
wutils
.
LOAD
)
assert
np
.
all
(
nib
.
load
(
'
outimg.nii
'
).
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
res
[
'
outarray
'
]
==
exparr
)
res
=
func
(
image
,
array
,
wutils
.
LOAD
,
wutils
.
LOAD
)
assert
np
.
all
(
res
[
'
outimage
'
].
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
res
[
'
outarray
'
]
==
exparr
)
def
test_fileOrThing_chained_outprefix
():
import
logging
logging
.
basicConfig
()
logging
.
getLogger
(
'
fsl.wrappers
'
).
setLevel
(
logging
.
DEBUG
)
@wutils.fileOrImage
(
'
image
'
,
'
outimage
'
,
outprefix
=
'
out
'
)
@wutils.fileOrArray
(
'
array
'
,
'
outarray
'
,
outprefix
=
'
out
'
)
def
func
(
image
,
array
,
out
,
**
kwa
):
image
=
nib
.
load
(
image
)
array
=
np
.
loadtxt
(
array
)
outimg
=
nib
.
nifti1
.
Nifti1Image
(
image
.
get_data
()
*
2
,
np
.
eye
(
4
))
outarr
=
array
*
2
np
.
savetxt
(
'
{}_array.txt
'
.
format
(
out
),
outarr
)
outimg
.
to_filename
(
'
{}_image.nii
'
.
format
(
out
))
image
=
nib
.
nifti1
.
Nifti1Image
(
np
.
array
([[
1
,
2
],
[
3
,
4
]]),
np
.
eye
(
4
))
array
=
np
.
array
([[
5
,
6
,
7
,
8
]])
expimg
=
nib
.
nifti1
.
Nifti1Image
(
image
.
get_data
()
*
2
,
np
.
eye
(
4
))
exparr
=
array
*
2
with
tempdir
.
tempdir
():
func
(
image
,
array
,
'
myout
'
)
assert
np
.
all
(
nib
.
load
(
'
myout_image.nii
'
).
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
np
.
loadtxt
(
'
myout_array.txt
'
)
==
exparr
)
res
=
func
(
image
,
array
,
wutils
.
LOAD
)
assert
np
.
all
(
res
[
'
out_image
'
].
get_data
()
==
expimg
.
get_data
())
assert
np
.
all
(
res
[
'
out_array
'
]
==
exparr
)
def
test_cmdwrapper
():
...
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