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FSL
fslpy
Commits
94b6e749
Commit
94b6e749
authored
6 years ago
by
Paul McCarthy
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BF: Avoid mem-mapping dicom/niftis, as the tempdir will be deleted.
parent
5bab6952
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fsl/data/dicom.py
+8
-4
8 additions, 4 deletions
fsl/data/dicom.py
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8 additions
and
4 deletions
fsl/data/dicom.py
+
8
−
4
View file @
94b6e749
...
...
@@ -203,9 +203,13 @@ def loadSeries(series):
sp
.
call
(
cmd
.
split
(),
stdout
=
devnull
,
stderr
=
devnull
)
files
=
glob
.
glob
(
op
.
join
(
td
,
'
{}*.nii
'
.
format
(
snum
)))
images
=
[
nib
.
load
(
f
)
for
f
in
files
]
# Force-load images into memory
[
i
.
get_data
()
for
i
in
images
]
images
=
[
nib
.
load
(
f
,
mmap
=
False
)
for
f
in
files
]
# copy images so nibabel no longer
# refs to the files (as they will
# be deleted), and use get_data()
# to force-load the image data.
images
=
[
nib
.
Nifti1Image
(
i
.
get_data
(),
None
,
i
.
header
)
for
i
in
images
]
return
[
DicomImage
(
i
,
series
,
dcmdir
,
name
=
desc
)
for
i
in
images
]
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