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FSL
fslpy
Commits
dc3ee77e
Commit
dc3ee77e
authored
Mar 29, 2019
by
Paul McCarthy
🚵
Browse files
Merge branch 'fslsub_update' into 'master'
Fslsub update See merge request fsl/fslpy!105
parents
ffb2c5c2
67b37e79
Pipeline
#3494
passed with stages
in 14 minutes and 57 seconds
Changes
1
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1
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Inline
Side-by-side
fsl/utils/fslsub.py
View file @
dc3ee77e
...
...
@@ -98,7 +98,7 @@ def submit(command,
:arg verbose: If True, use verbose mode
:return:
tuple
of submitted job id
s
:return:
string
of submitted job id
"""
from
fsl.utils.run
import
runfsl
...
...
@@ -202,10 +202,8 @@ def wait(job_ids):
:arg job_ids: string or tuple of strings with jobs that should finish
before continuing
"""
if
isinstance
(
job_ids
,
string_types
):
job_ids
=
(
job_ids
,
)
start_time
=
time
.
time
()
for
job_id
in
job_ids
:
for
job_id
in
_flatten_job_ids
(
job_ids
)
:
log
.
debug
(
'Waiting for job {}'
.
format
(
job_id
))
while
len
(
info
(
job_id
))
>
0
:
wait_time
=
min
(
max
(
1
,
(
time
.
time
()
-
start_time
)
/
3.
),
20
)
...
...
@@ -252,7 +250,7 @@ if name_type == 'module':
func = getattr(import_module(name), func_name)
elif name_type == 'script':
# retrieves a function defined in the __main__ script
local_execute = {{'__name__': '__not_main__'}}
local_execute = {{'__name__': '__not_main__'
, '__file__': name
}}
exec(open(name, 'r').read(), local_execute)
func = local_execute[func_name]
else:
...
...
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