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Commit f3f3d6a2 authored by Paul McCarthy's avatar Paul McCarthy :mountain_bicyclist:
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TEST: path tests check str/Path

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tests/test_fsl_utils_path.py
+ 67
− 114
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......@@ -5,15 +5,15 @@
# Author: Paul McCarthy <pauldmccarthy@gmail.com>
#
from __future__ import print_function
import os
import os.path as op
import shutil
import pathlib
import tempfile
from unittest import mock
import pytest
import mock
import fsl.utils.path as fslpath
import fsl.data.image as fslimage
......@@ -150,7 +150,8 @@ def test_hasExt():
]
for path, aexts, expected in tests:
assert fslpath.hasExt(path, aexts) == expected
assert fslpath.hasExt(path, aexts) == expected
assert fslpath.hasExt(pathlib.Path(path), aexts) == expected
def test_addExt_imageFiles_mustExist_shouldPass():
......@@ -248,18 +249,15 @@ def test_addExt_imageFiles_mustExist_shouldPass():
for f in files_to_create:
make_dummy_image_file(op.join(workdir, f))
print('files_to_create: ', files_to_create)
print('workdir: ', os.listdir(workdir))
print('prefix: ', prefix)
print('expected: ', expected)
result = fslpath.addExt(op.join(workdir, prefix),
allowedExts,
mustExist=True,
fileGroups=groups)
print('result: ', result)
result = fslpath.addExt(op.join(workdir, prefix),
allowedExts,
mustExist=True,
fileGroups=groups)
assert result == op.join(workdir, expected)
result = fslpath.addExt(pathlib.Path(op.join(workdir, prefix)),
allowedExts,
mustExist=True,
fileGroups=groups)
assert result == op.join(workdir, expected)
cleardir(workdir)
......@@ -336,20 +334,15 @@ def test_addExt_otherFiles_mustExist_shouldPass():
for f in files_to_create:
make_dummy_file(op.join(workdir, f))
print('files_to_create: ', files_to_create)
print('prefix: ', prefix)
print('allowedExts: ', allowedExts)
print('fileGroups: ', fileGroups)
print('workdir: ', os.listdir(workdir))
print('expected: ', expected)
result = fslpath.addExt(op.join(workdir, prefix),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
print('result: ', result)
result = fslpath.addExt(op.join(workdir, prefix),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
assert result == op.join(workdir, expected)
result = fslpath.addExt(pathlib.Path(op.join(workdir, prefix)),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
assert result == op.join(workdir, expected)
cleardir(workdir)
......@@ -422,18 +415,16 @@ def test_addExt_imageFiles_mustExist_shouldFail():
for f in files_to_create:
make_dummy_file(op.join(workdir, f))
print('files_to_create: ', files_to_create)
print('prefix: ', prefix)
print('workdir: ', os.listdir(workdir))
with pytest.raises(fslpath.PathError):
result = fslpath.addExt(op.join(workdir, prefix),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
print('result: ', result)
fslpath.addExt(op.join(workdir, prefix),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
with pytest.raises(fslpath.PathError):
fslpath.addExt(pathlib.Path(op.join(workdir, prefix)),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
finally:
shutil.rmtree(workdir)
......@@ -481,23 +472,19 @@ def test_addExt_otherFiles_mustExist_shouldFail():
for f in files_to_create:
make_dummy_file(op.join(workdir, f))
print('files_to_create: ', files_to_create)
print('prefix: ', prefix)
print('workdir: ', os.listdir(workdir))
with pytest.raises(fslpath.PathError):
result = fslpath.addExt(op.join(workdir, prefix),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
print('result: ', result)
fslpath.addExt(op.join(workdir, prefix),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
with pytest.raises(fslpath.PathError):
fslpath.addExt(pathlib.Path(op.join(workdir, prefix)),
allowedExts=allowedExts,
mustExist=True,
fileGroups=fileGroups)
finally:
shutil.rmtree(workdir)
pass
def test_addExt_noExist():
......@@ -544,11 +531,14 @@ def test_addExt_noExist():
]
for prefix, defaultExt, allowedExts, expected in tests:
assert fslpath.addExt(prefix,
allowedExts,
defaultExt=defaultExt,
mustExist=False) == expected
assert fslpath.addExt(pathlib.Path(prefix),
allowedExts,
defaultExt=defaultExt,
mustExist=False) == expected
def test_addExt_unambiguous():
......@@ -582,15 +572,20 @@ def test_addExt_unambiguous():
expected = expected.split()
with testdir(create) as td:
result = fslpath.addExt(prefix,
allowedExts=exts,
fileGroups=groups,
defaultExt=defaultExt,
unambiguous=False)
assert sorted(expected) == sorted(result)
result = fslpath.addExt(pathlib.Path(prefix),
allowedExts=exts,
fileGroups=groups,
defaultExt=defaultExt,
unambiguous=False)
assert sorted(expected) == sorted(result)
def test_removeExt():
allowedExts = fslimage.ALLOWED_EXTENSIONS
......@@ -622,7 +617,8 @@ def test_removeExt():
if len(test) == 2: allowed = allowedExts
else: allowed = test[2]
assert fslpath.removeExt(path, allowed) == output
assert fslpath.removeExt(path, allowed) == output
assert fslpath.removeExt(pathlib.Path(path), allowed) == output
def test_getExt():
......@@ -658,8 +654,8 @@ def test_getExt():
if len(test) == 2: allowed = allowedExts
else: allowed = test[2]
print(filename, '==', output)
assert fslpath.getExt(filename, allowed) == output
assert fslpath.getExt(filename, allowed) == output
assert fslpath.getExt(pathlib.Path(filename), allowed) == output
def test_splitExt():
......@@ -704,13 +700,14 @@ def test_splitExt():
for test in tests:
filename = test[0]
pfilename = pathlib.Path(filename)
outbase, outext = test[1]
if len(test) == 2: allowed = allowedExts
else: allowed = test[2]
print(filename, '==', (outbase, outext))
assert fslpath.splitExt(filename, allowed) == (outbase, outext)
assert fslpath.splitExt(filename, allowed) == (outbase, outext)
assert fslpath.splitExt(pfilename, allowed) == (outbase, outext)
# firstDot=True
tests = [
......@@ -721,7 +718,9 @@ def test_splitExt():
]
for f, exp in tests:
assert fslpath.splitExt(f, firstDot=True) == exp
pf = pathlib.Path(f)
assert fslpath.splitExt(f, firstDot=True) == exp
assert fslpath.splitExt(pf, firstDot=True) == exp
def test_getFileGroup_imageFiles_shouldPass():
......@@ -798,11 +797,6 @@ def test_getFileGroup_imageFiles_shouldPass():
with open(op.join(workdir, fn), 'wt') as f:
f.write('{}\n'.format(fn))
print()
print('files_to_create: ', files_to_create)
print('path: ', path)
print('files_to_expect: ', files_to_expect)
fullPaths = fslpath.getFileGroup(
op.join(workdir, path),
allowedExts=allowedExts,
......@@ -918,13 +912,6 @@ def test_getFileGroup_otherFiles_shouldPass():
with open(op.join(workdir, fn), 'wt') as f:
f.write('{}\n'.format(fn))
print()
print('files_to_create: ', files_to_create)
print('path: ', path)
print('allowedExts: ', allowedExts)
print('fileGroups: ', fileGroups)
print('files_to_expect: ', files_to_expect)
fullPaths = fslpath.getFileGroup(
op.join(workdir, path),
allowedExts=allowedExts,
......@@ -1006,32 +993,22 @@ def test_getFileGroup_shouldFail():
with open(op.join(workdir, fn), 'wt') as f:
f.write('{}\n'.format(fn))
print()
print('files_to_create: ', files_to_create)
print('path: ', path)
print('allowedExts: ', allowedExts)
print('fileGroups: ', fileGroups)
with pytest.raises(fslpath.PathError):
fullPaths = fslpath.getFileGroup(
fslpath.getFileGroup(
op.join(workdir, path),
allowedExts=allowedExts,
fileGroups=fileGroups,
fullPaths=True,
unambiguous=unambiguous)
print('fullPaths: ', fullPaths)
with pytest.raises(fslpath.PathError):
exts = fslpath.getFileGroup(
fslpath.getFileGroup(
op.join(workdir, path),
allowedExts=allowedExts,
fileGroups=fileGroups,
fullPaths=False,
unambiguous=unambiguous)
print('exts: ', exts)
cleardir(workdir)
finally:
......@@ -1117,16 +1094,9 @@ def test_removeDuplicates_imageFiles_shouldPass():
paths = paths.split()
expected = expected.split()
print()
print('files_to_create: ', files_to_create)
print('paths: ', paths)
print('expected: ', expected)
paths = [op.join(workdir, p) for p in paths]
result = fslpath.removeDuplicates(paths, allowedExts, groups)
print('result: ', result)
assert result == [op.join(workdir, e) for e in expected]
cleardir(workdir)
......@@ -1196,20 +1166,10 @@ def test_removeDuplicates_otherFiles_shouldPass():
for f in files_to_create:
make_dummy_file(op.join(workdir, f))
print('files_to_create: {}'.format(files_to_create))
print('paths: {}'.format(paths))
print('allowedExts: {}'.format(allowedExts))
print('fileGroups: {}'.format(fileGroups))
print('workdir: {}'.format(os.listdir(workdir)))
print('expected: {}'.format(expected))
result = fslpath.removeDuplicates([op.join(workdir, p) for p in paths],
allowedExts=allowedExts,
fileGroups=fileGroups)
print('result: {}'.format(result))
assert result == [op.join(workdir, e) for e in expected]
cleardir(workdir)
......@@ -1256,17 +1216,10 @@ def test_removeDuplicates_shouldFail():
with open(op.join(workdir, fn), 'wt') as f:
f.write('{}\n'.format(fn))
print()
print('files_to_create: ', files_to_create)
print('path: ', path)
print('allowedExts: ', allowedExts)
print('fileGroups: ', fileGroups)
with pytest.raises(fslpath.PathError):
result = fslpath.removeDuplicates(path,
allowedExts=allowedExts,
fileGroups=fileGroups)
print('result: ', result)
fslpath.removeDuplicates(path,
allowedExts=allowedExts,
fileGroups=fileGroups)
finally:
shutil.rmtree(workdir)
......
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