Commits · 5d8427607046f20b5f6ab867bc10c4fc9ef4b756 · FSL / fslpy · GitLab

Snippets Groups Projects

May 28, 2018
- TEST: mockFSLDIR helper function clobbers fsldevdir · 5d842760
  Paul McCarthy authored 6 years ago
  
  5d842760
- RF: Changed default stream handling for cmdwrapper/fslwrapper decorators · 3c7bff49
  Paul McCarthy authored 6 years ago
  
  3c7bff49
- TEST: Expanded run module unit tests · 257f6b80
  Paul McCarthy authored 6 years ago
  
  257f6b80
- RF,ENH: run now accepts a "log" argument, which allows control over where · a34afa7c
  Paul McCarthy authored 6 years ago
  
  stdout/stderr streams go.
  a34afa7c
May 27, 2018
- TEST: Unit test for fsldir/fsldevdir/fsl_prefix · 3738b75f
  Paul McCarthy authored 6 years ago
  
  3738b75f
- RF,ENH: Simplified management of $FSLDIR. Added $FSLDEVDIR. runfsl function · f7bf82cb
  Paul McCarthy authored 6 years ago
  
  gives $FSLDEVDIR precedence, and also allows a global override.
  f7bf82cb
- RF: Many bet parameters were missing. · badd80c8
  Paul McCarthy authored 6 years ago
  
  badd80c8
- RF: Improve test for bytes-vs-str output streams · 5614ce16
  Paul McCarthy authored 6 years ago
  
  5614ce16
- TEST: Test run(tee=True) · 58b22bfb
  Paul McCarthy authored 6 years ago
  
  58b22bfb
- ENH: fsl.utils.run.run now has a "tee" option, which captures process · 8bd3ea7b
  Paul McCarthy authored 6 years ago
  
  stdout/stderr, and also redirects it to real stdout/stderr.
  8bd3ea7b
- TEST: Update image tests for new ndim and data attributes. · e20eaf04
  Paul McCarthy authored 6 years ago
  
  e20eaf04
- RF: Image.ndims renamed to Image.ndim. New Image.data property - easy way to · 482a1290
  Paul McCarthy authored 6 years ago
  
  get image data as numpy array.
  482a1290
May 11, 2018
- Merge branch 'enh/wrappers_support_fsl_image' into 'master' · 0ee48df0
  Paul McCarthy authored 6 years ago
  
  Support fsl data image in wrappers See merge request fsl/fslpy!53
  0ee48df0
- Doc updates · 14b4211d
  Paul McCarthy authored 6 years ago
  
  14b4211d
- TEST: Test for fileOrImage. Fixed parse_data test - depends on FSL · 00eabbe1
  Paul McCarthy authored 6 years ago
  
  00eabbe1
- ENH: fileOrImage works with fsl.data.images. · c68da9a3
  Paul McCarthy authored 6 years ago
  
  c68da9a3
May 03, 2018
- DOC: Changelog · 523b1f6e
  Paul McCarthy authored 6 years ago
  
  523b1f6e
- Merge branch 'bf/label_atlas' into 'master' · 2eb327e9
  Paul McCarthy authored 6 years ago
  
  More label atlas bug fixes See merge request fsl/fslpy!52
  2eb327e9
- TEST: See previous commit · e30b62aa
  Paul McCarthy authored 6 years ago
  
  e30b62aa
- BF: Another fix - label atlas value does not correspond to its index in the · 7aecb004
  Paul McCarthy authored 6 years ago
  
  AtlasDescription.labels list.
  7aecb004
- Merge branch 'test/new_atlas' into 'master' · 670630ec
  Paul McCarthy authored 6 years ago
  
  Updates to atlases See merge request fsl/fslpy!51
  670630ec
- MAINT: CONDA_CHANNELS is an undocumented variable used by conda. · 1198b13e
  Paul McCarthy authored 6 years ago
  
  1198b13e
- TEST: Fixed broken assumptions (see previous commit) · 7a1bf04e
  Paul McCarthy authored 6 years ago
  
  7a1bf04e
- BF: Fixed invalid assumptions: · 801b6b7c
  Paul McCarthy authored 6 years ago
  
  - not all atlases have a 2mm version - label atlas value does not correspond to its index in the AtlasDescription.labels list.
  801b6b7c
- TEST: Need to take into account new SMATT label atlas · b37792bd
  Paul McCarthy authored 6 years ago
  
  b37792bd
May 02, 2018
- MAINT: Bump dev version · 0801c756
  Paul McCarthy authored 6 years ago
  
  0801c756
- changelog · 0baa2a9b
  Paul McCarthy authored 6 years ago
  
  0baa2a9b
- DOC: Note about commit messages · 57ab98ac
  Paul McCarthy authored 6 years ago
  
  57ab98ac
May 01, 2018
- MAINT: Fixes to requirements · a5483b9b
  Paul McCarthy authored 6 years ago
  
  a5483b9b
- Merge branch 'enh/skipUnchanged_invalidate' into 'master' · d4a1d9f1
  Paul McCarthy authored 6 years ago
  
  Enh/skip unchanged invalidate See merge request fsl/fslpy!50
  d4a1d9f1
- DOC: chaneglog · 68f7f069
  Paul McCarthy authored 6 years ago
  
  68f7f069
- TEST: Unit tests for skipUnchanged.invalidate · 43296f1f
  Paul McCarthy authored 6 years ago
  
  43296f1f
- ENH: memoize.skipUnchanged has an invalidate "method" · e74271e1
  Paul McCarthy authored 6 years ago
  
  e74271e1
Apr 30, 2018
- changelog · a4ac1921
  Paul McCarthy authored 6 years ago
  
  a4ac1921
- Merge branch 'bug_submit_script_from_main' into 'master' · e9870d73
  Paul McCarthy authored 6 years ago
  
  Added support for submitting functions from __main__ script See merge request fsl/fslpy!49
  e9870d73
- corrected bugs found when testing on cluster · c02af18c
  Michiel Cottaar authored 6 years ago
  
  c02af18c
- ENH: added support for submitting function from __main__ script · 88d3ca93
  Michiel Cottaar authored 6 years ago
  
  fixed a small documentation error as well added a warning about missing if __name__ == '__main__' guard in script
  88d3ca93
- Merge branch 'master' into 'master' · 5a670f7c
  Paul McCarthy authored 6 years ago
  
  Fix issue with callfsl unit tests, causing other tests to fail. See merge request fsl/fslpy!48
  5a670f7c
- Fix issue with callfsl unit tests, causing other tests to fail. · 1e390b9a
  Paul McCarthy authored 6 years ago
  
  1e390b9a
- Merge branch 'fix_fslsub' into 'master' · d6d18d56
  Paul McCarthy authored 6 years ago
  
  Various minor fixes to fslsub See merge request fsl/fslpy!47
  d6d18d56