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Created with Raphaël 2.2.023Jul171654325Jun2413121031May2621148213Apr1211129Mar191314Feb86514Jan11107421Dec94330Nov2823221816431Oct242221201918171121Sep1413119715Aug32131Jul181713109824Jun31May3028271132130AprTEST: Test displacements method, add test data setENH: Finish coefficientFieldToDisplacementField implementation. Add some docsTEST: Move transform test data, add test for coef->disp field conversionRF: Move FSL-specific coefficient field stuff from nonlinear.py into fnirt.pyENH: Implementation of CoefficientField class, and routine to convert fromBF: Only FNIRT coefficient fields clobber NIFTI headers - displacement fieldsBF: Bug in resampleTEST: More comprehensive testing of nonlinear moduleRF,BF: Fixes/adjustments to nonlinear module, and in particular toBF: only add in-bounds coordinatesTEST: Test DispField.transformENH: DisplacementField.transform methodRF: Tweak resample signatureENH: convert_x5 updated to handle non-linear. Nothing is testedENH: New fnirt module for reading/writing fnirt transforms. Expand/clean upTEST: fsl.utils.transform -> fsl.transform. Re-jigged transform testRF: fsl.utils.trabsform -> fsl.transformRF: Shim module at fsl.utils.transform which emits a deprecation warningTEST: Test deprecated moduleENH: New deprecated.warn function, for directly raising a deprecationwarning.RF: I think transforms is getting big enough to become a second-level packageTEST: Rename modules/functions in tests, new test for fsl_convert_x5RF: Rename dispfield to nonlinear - best kept all together i thinkTEST: Initial tests for dispfield moduleENH: New dispfield module for working with displacement fieldsRF: Don't notify if intent not changedTEST: Test changing intent propertyENH: Image class has ability to be created from another Image, and allowsTEST: Move some tests aroundMNT: New depemdency on h5pyDOC: fixes to contributing guide and changelogRF: Minor refactoringsMNT: convert script entry pointENH: Prototype X5 io module and x5<->flirt converter program.RF: Include identity transforms in image affines. Basic flirt matrixRF/ENH: transforms module is now a package, with affine, flirt sub-modulesTEST: Unit tests for new Image staticmethodsRF: Changed shape.affine generation methods to be staticmethods, as they mayRF,ENH: Refactor Nifti class - it now pre-calculates affines between voxel,Merge branch 'enh/roi' into 'master'