rita_uncertainty_gating

#!/usr/local/bin/bash

main_dir='/home/fs10/dtiuser/RITA/gating'

for direc in 03Aug04_SL
do
cd $direc

	for a in  13
	do
	#avwroi data1 gated_$a 0 128 0 128 $a 1
	#  avwroi data2 notgated_$a 0 128 0 128 $a 1
	  diffmodmhgibbs -k notgated_${a} -o gated_$a -m mask_sl$a -r bvecs -b bvals -B 1000 -S 20200 --saverat=20 --scj --noprec;
	 # diffmodmhgibbs -k notgated_${a} -o notgated_$a -m mask_sl$a -r bvecs -b bvals -B 1000 -S 20200 --saverat=20 --scj;
	done	
cd $main_dir
done