linkbedpost

#!/bin/sh

if [ $# -lt 1 ];then
    echo "Usage: linkbedpost <sourcedir>"
    echo ""
    echo "linkbedpost /usr/people/dtiuser/OCMR/CONTROLS/2mmdata/OCMR_20_001.bedpost"
    exit 1
fi


source=$1;
targ=`basename $1`


mkdir $targ 
mkdir ${targ}/xfms

for i in `imglob -extension ${source}/dti_* ${source}/mean_* ${source}/merged_* ${source}/dyad* ${source}/nodif_* ${source}/nodif_* ${source}/struct* ${source}/standard*`; do
    j=`basename $i`;
    ln -s $i ${targ}/$j
done

for i in ${source}/xfms/*.mat;do 
    j=`basename $i`;
    ln -s $i ${targ}/xfms/${j}
done
for i in ${source}/bv*;do
    j=`basename $i`;
    ln -s $i ${targ}/$j
done