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Commit b496046a authored by Tim Behrens's avatar Tim Behrens
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bedpostX_single_slice.sh
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...@@ -15,5 +15,5 @@ ${FSLDIR}/bin/xfibres\ ...@@ -15,5 +15,5 @@ ${FSLDIR}/bin/xfibres\
--mask=$subjdir/nodif_brain_mask_slice_$slicezp\ --mask=$subjdir/nodif_brain_mask_slice_$slicezp\
-b $subjdir/bvals -r $subjdir/bvecs\ -b $subjdir/bvals -r $subjdir/bvecs\
--forcedir --logdir=$subjdir.bedpost/diff_slices/data_slice_$slicezp\ --forcedir --logdir=$subjdir.bedpost/diff_slices/data_slice_$slicezp\
--nj=1000 --bi=600 --se=20 --upe=24 --nfibres=3 > $subjdir.bedpost/logs/log$slicezp && echo Done --nj=1000 --bi=600 --se=20 --upe=24 --nfibres=2 > $subjdir.bedpost/logs/log$slicezp && echo Done
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