xtract test from FSL course - run twice, once for CPU and once for GPU

fsl_course/fdt2/xtract/feedsInputs

+fsl_course_data/fdt2

fsl_course/fdt2/xtract/feedsRun

+#!/usr/bin/env bash
+
+set -e
+
+outdir=$1
+datadir=$2/fsl_course_data/fdt2/
+
+echo "slf1_l 0.1"  > ${outdir}/structureList
+echo "slf3_l 0.1" >> ${outdir}/structureList
+
+xtract                                                          \
+  -bpx ${datadir}/diffusion.bedpostX                            \
+  -stdwarp ${datadir}/structural/xfms/standard2diff_warp.nii.gz \
+  ${datadir}/structural/xfms/diff2standard_warp.nii.gz          \
+  -species HUMAN                                                \
+  -p ${FSLDIR}/data/xtract_data/HUMAN                           \
+  -str ${outdir}/structureList                                  \
+  -out ${outdir}/
+

fsl_course/fdt2/xtract_gpu/feedsInputs

+fsl_course_data/fdt2

fsl_course/fdt2/xtract_gpu/feedsRun

+#!/usr/bin/env bash
+
+set -e
+
+outdir=$1
+datadir=$2/fsl_course_data/fdt2/
+
+echo "slf1_l 10"  > ${outdir}/structureList
+echo "slf3_l 10" >> ${outdir}/structureList
+
+xtract                                                          \
+  -gpu                                                          \
+  -bpx ${datadir}/diffusion.bedpostX                            \
+  -stdwarp ${datadir}/structural/xfms/standard2diff_warp.nii.gz \
+  ${datadir}/structural/xfms/diff2standard_warp.nii.gz          \
+  -species HUMAN                                                \
+  -p ${FSLDIR}/data/xtract_data/HUMAN                           \
+  -str ${outdir}/structureList                                  \
+  -out ${outdir}/
+