Commits · e3a60b5669229ed26f5839308ec0e3d071c59184 · FSL / pyfeeds-tests · GitLab

Snippets Groups Projects

Aug 01, 2023
- BF: Script tries to remove wait file in pwd not outdir · e3a60b56
  Matthew Webster authored 1 year ago
  
  e3a60b56
Jul 14, 2023
- MNT: Run GPU jobs via fsl_sub, so they can be run locally or on the cluster · 8b2d65cc
  Paul McCarthy authored 1 year ago
  
  8b2d65cc
- MNT: Make scripts executable · 706fd549
  Matthew Webster authored 1 year ago
  
  706fd549
Jul 13, 2023
- TEST: Test for typical/standard MMORF run; needs external/shared data · a9dc2b4c
  Paul McCarthy authored 1 year ago
  
  View commits for tag 2307.0 2307.0
  
  a9dc2b4c
Jun 26, 2023
- Remove avwutils unit tests - they have been added to the fsl/avwutils project · 5fa576c1
  Paul McCarthy authored 1 year ago
  
  5fa576c1
Feb 01, 2023
- RF: originalFeeds already exists in /vols/Data/fsldev/dataSets/ · bd7bc0bd
  Paul McCarthy authored 2 years ago
  
  View commits for tag 2302.0 2302.0
  
  bd7bc0bd
- TEST: New pyfeeds test for old feeds tests. Relies on "old_feeds" external data · 107af3a1
  Paul McCarthy authored 2 years ago
  
  107af3a1
Jan 31, 2023
- RF: Usage incompatible wtih macOS version of sed · 5a172e5b
  Paul McCarthy authored 2 years ago
  
  View commits for tag 2301.0 2301.0
  
  5a172e5b
- MNT: Fixes to a few feedsRun scripts · d33157ba
  Paul McCarthy authored 2 years ago
  
  d33157ba
Oct 20, 2022
- BF: Changes for 6.0.6 · 6fca5689
  Matthew Webster authored 2 years ago
  
  6fca5689
Oct 17, 2022
- avscale unit test · 40457d8a
  Paul McCarthy authored 2 years ago
  
  View commits for tag 2210.0 2210.0
  
  40457d8a
Oct 15, 2022
- MNT: New path for flobs data · 171b3e88
  Matthew Webster authored 2 years ago
  
  171b3e88
Oct 14, 2022
- BF: 1st arg is outdir · a2475ab6
  Matthew Webster authored 2 years ago
  
  a2475ab6
- BF: feedsRun writing to test directory, not output directory · eab4b1bd
  Matthew Webster authored 2 years ago
  
  eab4b1bd
- BF: feedsRun writing to test directory, not output directory · 8f2af1f9
  Matthew Webster authored 2 years ago
  
  8f2af1f9
Sep 09, 2022
- TEST: use fixed seed; make radio/neuro images world-aligned for convenience · de52f06b
  Paul McCarthy authored 2 years ago
  
  de52f06b
Sep 07, 2022
- TEST: unit test for fslcomplex · d2737324
  Paul McCarthy authored 2 years ago
  
  d2737324
Aug 24, 2022
- TEST: check data has been rotated as well · 2c3d0aa8
  Paul McCarthy authored 2 years ago
  
  2c3d0aa8
- TEST: Test standard recipe for fixing image orientation. Note that this recipe · 90fe4b4f
  Paul McCarthy authored 2 years ago
  
  is broken in FSL 6.0.0-6.0.5.2, due to issues with fslorient/fslswapdim. Also test an alternate recipe which should work across all FSL versions
  90fe4b4f
Jul 25, 2022
- Test that applywarp --usesqform adheres to FSL sform/qform usage · e3a4f76b
  Paul McCarthy authored 2 years ago
  
  conventions.
  View commits for tag 2208.0 2208.0
  
  e3a4f76b
Mar 19, 2022
- BF: Works for both queue and local invocation · 7d196a78
  Matthew Webster authored 3 years ago and Matthew Webster committed 3 years ago
  
  7d196a78
- BF: feedsRun was unsetting SGE_ROOT causing new fsl_sub to fail · dd3e1bc5
  Matthew Webster authored 3 years ago and Matthew Webster committed 3 years ago
  
  dd3e1bc5
Mar 17, 2022
- BF: Keep track of which jobs were submitted, so we know what outputs to expect · b05c75a6
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2203.1 2203.1
  
  b05c75a6
- RF: use new fsl_sub syntax · 4f591f23
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2203.0 2203.0
  
  4f591f23
- MNT: Allow fsl_sub to fail, e.g. when trying to run eddy_cuda on a non-cuda · f881b286
  Paul McCarthy authored 3 years ago
  
  machine. Save runEddy output to file so we can inspect it on failures
  f881b286
- MNT: need hash bang · d1192a98
  Paul McCarthy authored 3 years ago
  
  d1192a98
Nov 25, 2021
- BF: Wrong variable name · 38f8b08e
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2111.0 2111.0
  
  38f8b08e
Nov 24, 2021
- BF: typo · 59def6e8
  Paul McCarthy authored 3 years ago
  
  59def6e8
- BF: Fix var naming bugs by unifying cpu/gpu submit code · 8f8365f0
  Paul McCarthy authored 3 years ago
  
  8f8365f0
- RF: Speed up polling time · 6e26fda4
  Paul McCarthy authored 3 years ago
  
  6e26fda4
- BF: Couple of typos. Check fsl_sub exit code · efd72eb3
  Paul McCarthy authored 3 years ago
  
  efd72eb3
- BF: Fix multi-line strings, wrong var name in runEddy · 5bef154e
  Paul McCarthy authored 3 years ago
  
  5bef154e
- RF: Add feedsInputs/runEddy, should have been in last commit · f90d98ef
  Paul McCarthy authored 3 years ago
  
  f90d98ef
- RF: Major re-arrangement of eddy tests so that job submission / monitoring · 55fe275f
  Paul McCarthy authored 3 years ago
  
  code is shared across all tests in a common "runEddy" script. Also test both $FSLDIR/bin/eddy_openmp and $FSLDIR/bin/eddy_cpu if either exist.
  55fe275f
Nov 23, 2021
- RF: Allow eddy tests to run if eddy_openmp(/eddy_cpu) is not installed. · f8cda2a3
  Paul McCarthy authored 3 years ago
  
  f8cda2a3
Oct 25, 2021
- RF: direct bedpostx_gpu output to output dir · 1ab61048
  Paul McCarthy authored 3 years ago
  
  1ab61048
- BF: Wrong input file paths · 1b72e69e
  Paul McCarthy authored 3 years ago
  
  1b72e69e
- BF: Spurious dblquote · e7e3a5c8
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2110.1 2110.1
  
  e7e3a5c8
Oct 22, 2021
- TEST: Ported runme_gpu scripts to feedsRun equivalents · 2f856c75
  Paul McCarthy authored 3 years ago
  
  View commits for tag 2110.0 2110.0
  
  2f856c75
- MNT: Initial copy of Chris Rorden's gpu_test · 0b2d8ad6
  Paul McCarthy authored 3 years ago
  
  0b2d8ad6