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BF: /opt/fmrib/fsl may not contain activate

Merged Matthew Webster requested to merge bf/activate into master
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#!/usr/bin/env fslpython
#!/usr/bin/env fslpython
 
#Note this script requires a conda activate script to be on the PATH
 
import os
import os
import shlex
import shlex
import tempfile
import tempfile
@@ -32,7 +34,7 @@ def run(cmd, ompthreads=None, blasthreads=None, fslskipglobal=None):
@@ -32,7 +34,7 @@ def run(cmd, ompthreads=None, blasthreads=None, fslskipglobal=None):
def main():
def main():
buildcmds = ['source $FSLDIR/bin/activate $FSLDIR',
buildcmds = ['source activate $FSLDIR',
'source $FSLDIR/etc/fslconf/fsl-devel.sh',
'source $FSLDIR/etc/fslconf/fsl-devel.sh',
'make']
'make']
sp.run('; '.join(buildcmds), check=True, shell=True)
sp.run('; '.join(buildcmds), check=True, shell=True)
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