This repository contains a set of tests which can be run via pyfeeds to test an FSL installation.

Note that many tests are dependent on various benchmark data sets which are hosted internally at FMRIB, and thus cannot be executed outside of the FMRIB computing system.

Note also that some tests (e.g. fsl_course/fdt/bedpostx_gpu/) need to be run on a CUDA-capable machine.

Run the tests from the repository root as follows:

pyfeeds run                      \
    -c pyfeeds_config.cfg        \
    -i /path/to/input/data       \
    -b /path/to/benchmark/data   \
    -o /path/to/output_direcfory \
    [./paths/to/tests/you/want/to/run/ ...]