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FSL
siena
Commits
0f6ffc8f
Commit
0f6ffc8f
authored
4 years ago
by
Matthew Webster
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Use MNI152-named version of template
parent
c52c3643
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Use MNI152-named version of template
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viena_quant
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viena_quant
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0f6ffc8f
...
...
@@ -9,9 +9,9 @@
# This code is released to the public domain.
#
# The VIENA modification of SIENA was implemented at the Department of Radiology of the VU University Medical Center, Amsterdam, The Netherlands
# Authors: Hugo Vrenken, Ingrid Sluimer, Veronica Popescu, Ronald van Schijndel and Adriaan Versteeg.
# Authors: Hugo Vrenken, Ingrid Sluimer, Veronica Popescu, Ronald van Schijndel and Adriaan Versteeg.
# Questions or comments can be sent to: H.Vrenken@vumc.nl
#
#
# Neither the VU University Medical Center, the University of Oxford, nor any of
# their employees imply any warranty of usefulness of this software
# for any purpose, and do not assume any liability for damages,
...
...
@@ -31,7 +31,7 @@
# Output:
# - report.viena
#
# This version of the script was adapted from the July 2007 script
# This version of the script was adapted from the July 2007 script
# Ventricular_quantification.script by Hugo Vrenken.
function
usage
()
...
...
@@ -67,7 +67,7 @@ m=1.002
thresh
=
50
# The standard brain
TEMPLATEBRAIN
=
"
${
FSLDIR
}
/data/standard/
avg
152T1_brain"
TEMPLATEBRAIN
=
"
${
FSLDIR
}
/data/standard/
MNI
152
_
T1_
2mm_
brain"
# First outputs
...
...
@@ -257,7 +257,7 @@ echo >> "$LOG"
echo
"finalPVVC
${
meanpvvc
}
%"
>>
"
$LOG
"
echo
""
echo
"meanpvvc
${
meanpvvc
}
"
echo
"meanpvvc
${
meanpvvc
}
"
echo
""
#----------------------------------------------------------------------------
...
...
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