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Commit 0f6ffc8f authored by Matthew Webster's avatar Matthew Webster
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Use MNI152-named version of template

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1 merge request!3Use MNI152-named version of template
......@@ -9,9 +9,9 @@
# This code is released to the public domain.
#
# The VIENA modification of SIENA was implemented at the Department of Radiology of the VU University Medical Center, Amsterdam, The Netherlands
# Authors: Hugo Vrenken, Ingrid Sluimer, Veronica Popescu, Ronald van Schijndel and Adriaan Versteeg.
# Authors: Hugo Vrenken, Ingrid Sluimer, Veronica Popescu, Ronald van Schijndel and Adriaan Versteeg.
# Questions or comments can be sent to: H.Vrenken@vumc.nl
#
#
# Neither the VU University Medical Center, the University of Oxford, nor any of
# their employees imply any warranty of usefulness of this software
# for any purpose, and do not assume any liability for damages,
......@@ -31,7 +31,7 @@
# Output:
# - report.viena
#
# This version of the script was adapted from the July 2007 script
# This version of the script was adapted from the July 2007 script
# Ventricular_quantification.script by Hugo Vrenken.
function usage()
......@@ -67,7 +67,7 @@ m=1.002
thresh=50
# The standard brain
TEMPLATEBRAIN="${FSLDIR}/data/standard/avg152T1_brain"
TEMPLATEBRAIN="${FSLDIR}/data/standard/MNI152_T1_2mm_brain"
# First outputs
......@@ -257,7 +257,7 @@ echo >> "$LOG"
echo "finalPVVC ${meanpvvc} %" >> "$LOG"
echo ""
echo "meanpvvc ${meanpvvc}"
echo "meanpvvc ${meanpvvc}"
echo ""
#----------------------------------------------------------------------------
......
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